Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00123 ATGGACATGCCTTCTTCAAGTTCAAGCCATGTTGTTGGCGCTGCTTCttctgcataccgtggcgtccgtaagaggaaatgggggaagtgggtgtccgaaatccgcgagccaggaaccaagacaagaatctggctcgggagtttcgagactcccgagatggccgccgcagcgtacgacgtcgccgccttgcatttcaggggccgcgacgccaggctcaacttccctgagcttgccagcaccctgccgcgccccgtcagcaacAATGCCGACCACATACGCATGGCGGCCCACGAGGCCGCTCTCAGGCTCCGGACAAACCCCGCCGCGCCCAACACCGTTGGCTCCGCCGGCTCCGTCTCCGCCGCGCCGCTAACCGTGAGGCTCTCCCCCACTCAGATTCAGGCCATCAATGACTCGCCCATGGACTCACCACAGACTTGGATGCAAATGCCAGACACTTTCATGATGCATGATCAGTCCATGATGTTCGCAAACGGGTATTCCTTTGAGGACAACGAGTGGGAGGATATGCACAATGATTCTCTCTGGGATCCTTAG 558 0.3513 MDMPSSSSSHVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAAPNTVGSAGSVSAAPLTVRLSPTQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFANGYSFEDNEWEDMHNDSLWDP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00123 185 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gma11g00123 185 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Gma11g00123 185 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Gma11g00123 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 184 - -
Gma11g00123 185 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Gma11g00123 185 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gma11g00123 185 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gma11g00123 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 9 184 - -
Gma11g00123 185 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Gma11g00123 185 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00123 Gma-Chr11 1000320 1000877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00123 17 185 AP2-EREBP Transcription Factor Family AT1G71450 62.791 1.64e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma11g00123 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00123 - - gmx:100815719 376.711