Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00117 ATGGATATTCACTCCGTTTTCTGCTCTATGCAAATTTCACTATCATACAATCGTGGTAACCCTCTTCTACGCTTCTCTCGTGCAATTGTTATCCAATGTAGTAAAAAACACAACTTTCTCAAGTCCCCCAATCGCTGGGTCCGAAACAAGGGTGTCAAAGATGTGGGCTCAGAATTTGATAGCAAAACCAAAAGCATAAAAACAACGCTTTTTAGGAGTCCTGATATTGGGGAAAATGAAGAACTTTCCAGTAATTTGTGCAGCCAATTAATTTGTGAATGTTGCAAAGAAGGAGACTTGGATAGAGCTATGTCTCTTCTCTCTCAAATGGAAGCTAAGGGGTTTCACCTCAGTTCAACATCTTATGCTTGTCTTATTGAAGCCCTTGGAAATGTTGGAAGGACTTCAGAGGCTGATATGTTGTTTAAGGAAATGGTTTGTTATGGCTATAAACCCAAATTGAATTTGTACCACAGTTTGCTTAGAGGGTTTTTGAAGAAAGGTTTGTTAGGACTTGCAAATGGGGTCTTGAAGGAAATGGATGACTTGGGCATATGGAGGAGTAAAGAGACATATCAGATCTTTCTGGATTACTATGTTGGTGCTGGTAGGTTGGAAGATACTTGGTCAACAATCAATGAGATGAAGCAAAAGGGGTTTCCACTCAACTCATTTATGTATAGCAAGGTTGTTGGGATTTATAGGGACAATGGGATGTGGAAGAAAGCAATAGAGGTTTTGGAAGAGATTAGGGAGAGGGGGATTTCTTTAGACACTCATATTTGTAACAGTATTATTGATACCTTTGGCAAATATGGCGAATTAGATGAGGCGTTGAAATTGTTCAAGAAAATGCAAAAAGAAGGTGTGAGGCCAAACATAGTGACATGGAATTCACTGATTAAGTGGCACTGCAAAGAAGGTGATTTCATGAAAGCCTTTCATTTGTTTACTGATATGCAAGAGCAAGGATTATATCCGGACCCTAAGATCTTTGTCACCATCATTAGCTGCTTGGGGGAGCAGGGGAAGTGGGACATAATAAAGAAATATTTTGAAAGCATGAAAATCCGGGGAAACAAAGAATATGGGGCAGTTTATGCTGTTTTGGTTGATATTTATGGACAATATGGGAAATTTCAGAATGCTGGGGAGTGTGTACAAGCACTAAAGTCCGAAGGTGTGCTAGTTTCACCAAGCATTTTTTGTGTGTTAGCAAATGCTTATGCTCAGCAGGGCTTGTGTGAACAGGTCATTATGGTGCTGCAGATTATGGAAGCAGAGGGAATTGAACCAAATATTGTCATGCTCAATATGTTAATCAATGCATTTGGTAATGCTGGAAGATATATGGAAGCAATATCTGTTTATCATCATATAAAAGAAAGTGGTGTTAGCCCTGATGTGGTCACCTACACTACACTTATGAAGGCATTTATAAGGGCCAAAAAGTTCGATGAGGTAGTTCCCATTATTTACAAGGAAATGGAGAATGATGGATGCACTCCTGATAGAAAAGCTAGACAGATGTTACAAGTTGCTTTAACGCTCATTGATCATGATAGATTGATAATAAAGACTAGAATGTTATTGGCTGCAAAAGATGCAATGACATGCCAGCTTTTGATTGAATATGGGATCCTCAGACAAATTAGTCTGACAATTTCAAGACCAAGGAAAGTCAAGTTAGCTCAGGATACCCCGGGGGTATTGATCATCGTGTTAATCAAGGAATCAGTTGTGCTTTGCTATCCAAGCAAGCACTCTGGTTTTGGTGGAGGTTATGCTCAGACACCGGATGATGCGTGGACCATGTTCAAGTCAATGGAGTTTCAAAATCTTGTATCTTGGAATTCAGTGATTGCAGGTAGCCAACCGGATATTGTGTCATGGACTGCTCTTATTTCTGCGTTTGCAGAACAGGATCCTGAGCAGGCTTTCCTCCTTTTTTGCCAACTTCATCGTCAAAGTTATTTGCCAGACTGGTATACATTCTCTATTGCTTTAAAAGCAAGCACATACTTCGCTACTGAGCAACGTGCCATGGATATTCACTCACAAGTAATTAAAGAAGGGTTTCAGGAAGATACTGTTCTCTGTAATGCCTTGATACATGCTTATGCGTGGTGTGGCTCCTTAGCTTTGTCGAAACAAGTATTCAATGAAATGGGCTGCCGTGATTTGGTTTCTTGGAATTCAATGCTCAAATCTTATGCCATACATGGTCAAACTAAAGATGCAGTGGAGCTCTTCCAGCGAATGAATGTCTGTACAGATTCTGCAACCTTTGTCGTGCTTCTCTCAGCTTGCAGTCATGTTGGATTTGTTGACGAAGGAGTGAAATTGTTTAACTGTATGTCTGATGATCATGGTGTTGTTCCTCAACTAGATCACTATTCCTGCATGGTTGACCTTTATGGAGGAGCTGGGAAGATATTTGAGGCTGAGGAGTTAATACGTAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGGAAGCATGGCAAGACTCCCTTGGCCAAATCAGCAGCTGATAAATTTAAAGAATTAGACCAAACAATTCATTGGGATATGTACAAATGTCAAACATATATTCCTCTGGCGGTAGTTTTACAAAAGCTTGCCTGA 2649 0.4002 MDIHSVFCSMQISLSYNRGNPLLRFSRAIVIQCSKKHNFLKSPNRWVRNKGVKDVGSEFDSKTKSIKTTLFRSPDIGENEELSSNLCSQLICECCKEGDLDRAMSLLSQMEAKGFHLSSTSYACLIEALGNVGRTSEADMLFKEMVCYGYKPKLNLYHSLLRGFLKKGLLGLANGVLKEMDDLGIWRSKETYQIFLDYYVGAGRLEDTWSTINEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVVPIIYKEMENDGCTPDRKARQMLQVALTLIDHDRLIIKTRMLLAAKDAMTCQLLIEYGILRQISLTISRPRKVKLAQDTPGVLIIVLIKESVVLCYPSKHSGFGGGYAQTPDDAWTMFKSMEFQNLVSWNSVIAGSQPDIVSWTALISAFAEQDPEQAFLLFCQLHRQSYLPDWYTFSIALKASTYFATEQRAMDIHSQVIKEGFQEDTVLCNALIHAYAWCGSLALSKQVFNEMGCRDLVSWNSMLKSYAIHGQTKDAVELFQRMNVCTDSATFVVLLSACSHVGFVDEGVKLFNCMSDDHGVVPQLDHYSCMVDLYGGAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGKTPLAKSAADKFKELDQTIHWDMYKCQTYIPLAVVLQKLA 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00117 882 Gene3D Tetratricopeptide repeat domain 78 170 IPR011990 GO:0005515
Gma11g00117 882 Gene3D Tetratricopeptide repeat domain 405 520 IPR011990 GO:0005515
Gma11g00117 882 Pfam PPR repeat 798 823 IPR002885 -
Gma11g00117 882 Pfam PPR repeat 262 290 IPR002885 -
Gma11g00117 882 Pfam PPR repeat 729 754 IPR002885 -
Gma11g00117 882 Pfam PPR repeat 698 725 IPR002885 -
Gma11g00117 882 Pfam PPR repeat 401 430 IPR002885 -
Gma11g00117 882 Pfam PPR repeat 226 255 IPR002885 -
Gma11g00117 882 Pfam PPR repeat 762 788 IPR002885 -
Gma11g00117 882 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 10 520 - -
Gma11g00117 882 Pfam Pentacotripeptide-repeat region of PRORP 86 216 IPR033443 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Gma11g00117 882 SUPERFAMILY HCP-like 233 462 - -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 121 152 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 87 118 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 470 504 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 729 754 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 191 223 IPR002885 -
Gma11g00117 882 TIGRFAM PPR: pentatricopeptide repeat domain 226 259 IPR002885 -
Gma11g00117 882 Gene3D Tetratricopeptide repeat domain 757 872 IPR011990 GO:0005515
Gma11g00117 882 Gene3D Tetratricopeptide repeat domain 196 404 IPR011990 GO:0005515
Gma11g00117 882 Gene3D Tetratricopeptide repeat domain 640 756 IPR011990 GO:0005515
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 503 IPR002885 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Gma11g00117 882 PANTHER OS06G0710800 PROTEIN 653 822 - -
Gma11g00117 882 PANTHER OS06G0710800 PROTEIN 10 520 - -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 757 IPR002885 -
Gma11g00117 882 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 653 822 - -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Gma11g00117 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 759 794 IPR002885 -
Gma11g00117 882 Pfam PPR repeat family 292 338 IPR002885 -
Gma11g00117 882 Pfam PPR repeat family 626 671 IPR002885 -
Gma11g00117 882 Pfam PPR repeat family 432 480 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00117 Gma-Chr11 938357 942478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00117 85 881 Glycoside Hydrolase AT3G49170 20.606 6.42e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00117 - - gmx:100814666 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00117 11 938357 942478 Gma10g02298 10 50581625 50589730 PCT
Gma11g00117 11 938357 942478 Gma20g01415 20 41253631 41263359 PCT