Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00106 ATGAGCCCAACACCCAACAGGATCTTTTTGCGGACCTCCCTCAgaactcccgttaaacttctcggaagggaagatgccagcgtagattggtacaatttggagaaatccaagcgcgtgaaggcattccgatgtggtgaatttgatggatgtattgaaagggcggagtccgcccagggtatgccgttaaagaaaagagagaaatatgcacgcagagaagatgccattcttcatgctcttgaactcgagaagcaaatgttaaagaagcaagaaaaaataggactggagcaacttggtgtagcacaccaagtaaagaggagcaaatttgtttatctgccagaagaatctagtgattctctggattacaaggagactcctgtcaatgttgcaatgtcccaatttggaggggagtatgcttactgcagttctttagctgaagagagtgagtctgcttttatggatgttgttgaatctgattctcttgaaactggttctgctaatgctgattcagattcctctgaaatggaacttgacaaagatgacgagatgactacactttcagAAATTGGTCGTGATACTGAAGAACAAGAAAGCACTAGCAGTGAGGAACTTGATGAGTTGGCAATTTCTGGTGACATGCCTCACCTCTATCCTCGTCAGCATATATCATGTAGTGAAGCTGTATCCAAATGGAAGTTAAAAGGAAAAAGGAATAATCGTAATCTTGTAAAAAGGTCTGTTGGTGCTGCTGATGGGAAAGGTGTTGTTTTATATGAAGCAGATGTTGAAGGATTAAGAAGCCGTTTAAATCACAAGAGATTGGTGCCTAGTATGCATTATTATGGGAATGGTATTAGTGATGTTTTTGATGACACCGATCAAATGTTTGGTTTTGAAGATGAATATTCTCCAACTTCCAAAGCACTAGCAAAAGGTCAAAACAAAATTGATCATggtgttgattgggatgaatgggcttgggaggatcagactgctttgaaaggatattgggaaagtaaagggtttgctccattatataGTGATAGATATCATTTTGATGGAAGGATCAGGTCGATGCTGGTAGATGTAGACTTGAAGGTTCAAGCAAGCTATCGTAAAGCGCCTGTCCCCATTGTTTCTATCACAAGTAAGTTAGATGGGAAGTCAATAATAGGGCACCCAATCCAAATTGAATCCCTTAAGGATGGTTCATCGGATAAACTTTTTTCTGCAATTGATGACTTTAGTAACGATGGGACTGGCTTTGAGGGAAGTAGTGTACTTCCACCAGCTTGGAGGACTGCAAGGAGAACAGCAAATTTTCGTGTTCCTCGTCCCCTTGTATTGTCATCTAATGGTGCTGATAGTTATGCAGATTTCTGCATTGATCAAGAAAGAAATATTGAATATAAGAAATTAAATGGTGGAAGTTCCAATCATATGGCAAGCCTTTCCAGGAAGAGTGGCTTTAACAGTTCTGTGCCTTCAGTAGACAAGAAGTCCTCAAAAAAGATGCCAAAGAAAGTGAGCTTGTCATCTAGTCAGAAAACTAGAACTCTATCCTCATTATCTATTGAAAATAATCATGGTAAAAAGCAATTGCATGATAGAAGTTTTTATCAAACAAATAGGTTGACTAAACCAGAGCACGAGCAGTTCCGTTTTGGTTTGTTCGTCGCCGCTGCGAGAGAGTGCCCTAGCTACCTCTCGAGCTTGCCACCTACGCGACTGAAAAGTCCATTTGTTTTTTTCTCTCGCTTTTCGATTGTGAAACAGCGTCGCAAGGAGAAAGAAATGGATGAGGGAAAGCATAAATCGAGGAAAGAAAATCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGCGATCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAAGGAGAAGAGGGATCGTGAGTCCCGAAGACATGAGAGAGAGAGTACTGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCTCAAAGATAAAGATAAGGATGTGGACCGAGAAAGAGGTCGAGACAAGAAAAGGGAAAGGGACAGGGAAAGGGAGAGGACTGACAGAGTAAGAGAGAAAGAAAGAGAGAGGGAAAGAaaagaggataaggagaggatcagagagagagaaagagaaaggaaggatcatgagagagagaaggaaaaggaaAGAGAAAGGGGGAGGAAAGCACGAGGGAGGGAGAAGCGTAGGGAAGTTGATAGTGATTGCAGTGATGGTGAATCTAAGGAGCGGGATAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGTCAAGCAGAAAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGGCGGAGATGATTCAGATACCAAAGATGAAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAGGGAAGAAGCAGAAAGAGAAAAACACGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACGCTTGAAGGGGAATCTGATGATGAAGAAGGACCAGGTACTGGGAAGCAGACAGGTATGGATGTTGATGAAGATGACAAACCTGCTGATAAGGAGCCTAAGGATGTGATGGTGGTAGATACTGTTAATGGGACAATTGCATCTGATTTACAGGATGGACCTGCTGGTGCTCCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTAAACAATGCTGTGACATCGTCACTTTCTGGTAAAGCCATCGACGTAAAACCCAAGGATAAAGGGAATGAGCAAAATCGTGGTGCACAGTCAAGGAAAGTTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATGATGAAGTGGAGAAGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTGGTTGACCACTCAAAGATCGTCTATGAACCATTCAAGAAAAACTTTTATATTGAAGTGAAGGAGGTCTCGAAGATGACTCCTGAAGAATCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCGCTCCCTGTAATCATGAGCGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCTGTTGTTGCTGGAGATGGACCTATTGGGCTCATTATGGCCCCTACAAGGGAACTAGTTCAACAGATTCACAGTGATATAAAGAAATTTGCTAAGGTACTGGGTCTGAGGTGTGTGCCTGTGTATGGAGGATCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTAGTGGAAAAATAACTAACTTGCATAGAGTAACTTATCTGGTAATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACACGTATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTGTTTTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTCTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAAAAAGGAAAGATTTTGATATTTGTTCACTCACAGGAGAAATGTGATAGTTTGTTCAAAGATCTGCTCAGGCATGGTTATCCCTGCCTTTCTCTTCATGGGGCCAAGGACCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGCCGGAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAGCTATCTGAGCAGACTGTTCCAAATGATCTGAAAGCTCTTGCTGGTAGCTTTATGGCAAAAGTTAATCAAGGACTGGAGCAAGCTCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGCGGAAAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGAGAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCTGGCGGTGATATCTCACAGCATTCTGCTTTTGCTCAGATTATCGCTGCCACTAAAGGTAATGTTCCTGCATTGCCTACTCCAATGCTCCTACCATCCTTGCCAGTTTTGCCTGGGACAGGGCTACCTCTTCCTGCAAACGAGGGGGCGGCTCGAGCAGCAGCAATAGCTGCTCTAAACTTGCAGGACAAATTAGATAAAATACGATCAGAAGCATTACCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTTCCCCAAAATGCTCGCTGGAAAGTTACACACAAGGAAACTTTAGGCCCTATTTCTGAATGGAGTGGAGCTGCAATTACCACCAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCCGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCATTCTGTTAAGTCAGCTAAAGCAGACTTGAAGCGCGTTTTGGAAGACATCACAAATCAGGCTATGCAACTTCCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTGCATAATGGGACTCTGTTAAACACTCTTGTCTCGCGCCCCAATCTGGGACAAATTGCACATATTGTCTGCCTTTCACTTTTGCCGTACATACAGGTGGGTCTTTTGAACCTATGA 5226 0.3754 MSPTPNRIFLRTSLRTPVKLLGREDASVDWYNLEKSKRVKAFRCGEFDGCIERAESAQGMPLKKREKYARREDAILHALELEKQMLKKQEKIGLEQLGVAHQVKRSKFVYLPEESSDSLDYKETPVNVAMSQFGGEYAYCSSLAEESESAFMDVVESDSLETGSANADSDSSEMELDKDDEMTTLSEIGRDTEEQESTSSEELDELAISGDMPHLYPRQHISCSEAVSKWKLKGKRNNRNLVKRSVGAADGKGVVLYEADVEGLRSRLNHKRLVPSMHYYGNGISDVFDDTDQMFGFEDEYSPTSKALAKGQNKIDHGVDWDEWAWEDQTALKGYWESKGFAPLYSDRYHFDGRIRSMLVDVDLKVQASYRKAPVPIVSITSKLDGKSIIGHPIQIESLKDGSSDKLFSAIDDFSNDGTGFEGSSVLPPAWRTARRTANFRVPRPLVLSSNGADSYADFCIDQERNIEYKKLNGGSSNHMASLSRKSGFNSSVPSVDKKSSKKMPKKVSLSSSQKTRTLSSLSIENNHGKKQLHDRSFYQTNRLTKPEHEQFRFGLFVAAARECPSYLSSLPPTRLKSPFVFFSRFSIVKQRRKEKEMDEGKHKSRKENHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDKEKRDRESRRHERESTDSEDRYDRDREKLKDKDKDVDRERGRDKKRERDRERERTDRVREKERERERKEDKERIRERERERKDHEREKEKERERGRKARGREKRREVDSDCSDGESKERDRKRHRKEDGDYKRERERSVSKSSRKSEEHEGSPRKKSGGDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASANEPESGKTWTLEGESDDEEGPGTGKQTGMDVDEDDKPADKEPKDVMVVDTVNGTIASDLQDGPAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSGKAIDVKPKDKGNEQNRGAQSRKVSNKSIGRIIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIVYEPFKKNFYIEVKEVSKMTPEESAVYRKQLELKIHGKDVPKPIKSWHQTGLASKILETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLHRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNVPALPTPMLLPSLPVLPGTGLPLPANEGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKADLKRVLEDITNQAMQLPGGTQPGKYSVVHNGTLLNTLVSRPNLGQIAHIVCLSLLPYIQVGLLNL 1741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00106 1741 Gene3D - 1295 1468 IPR027417 -
Gma11g00106 1741 CDD SF2_C_DEAD 1305 1435 - -
Gma11g00106 1741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1321 1465 IPR001650 -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 472 534 - -
Gma11g00106 1741 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 755 1539 - -
Gma11g00106 1741 SMART ultradead3 1103 1308 IPR014001 -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 158 179 - -
Gma11g00106 1741 Pfam DEAD/DEAH box helicase 1109 1280 IPR011545 GO:0003676|GO:0005524
Gma11g00106 1741 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1239 1247 IPR000629 -
Gma11g00106 1741 CDD DEADc_DDX46 1073 1294 - -
Gma11g00106 1741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1115 1293 IPR014001 -
Gma11g00106 1741 Coils Coil 817 854 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 592 907 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 999 1014 - -
Gma11g00106 1741 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 755 1539 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 870 907 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 506 527 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 592 862 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 1500 1529 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 1500 1514 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 958 1018 - -
Gma11g00106 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1067 1295 IPR027417 -
Gma11g00106 1741 Pfam Helicase conserved C-terminal domain 1318 1426 IPR001650 -
Gma11g00106 1741 SMART helicmild6 1345 1426 IPR001650 -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 472 498 - -
Gma11g00106 1741 Coils Coil 694 744 - -
Gma11g00106 1741 MobiDBLite consensus disorder prediction 914 933 - -
Gma11g00106 1741 Gene3D - 1037 1294 IPR027417 -
Gma11g00106 1741 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1084 1112 IPR014014 GO:0003724
Gma11g00106 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1231 1464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00106 Gma-Chr11 869693 881833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00106 1071 1446 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 2.32e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00106 K12811 - gmx:100806467 1816.97