Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00093 ATGGGAACACAACCCCAGCAAACATTTCGGGAGGAAGAGGAGGAGGAGATGCAAGGCCATGGAACTACGATGTCAGGTCAATCAATGTCAACAAGCAGAAGTGTCGGGTCTCCATCCAGCCGGAGTGAGCAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCACCGTTGCCAAGAAGAAAAAGAGGGGCCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGTCTCCGTCAATTCAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGCAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCCGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACTAGTCTAAGCGATATTGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGACACGGCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGATAATACAACAGATAATTCTACAGATGGCGGTGAAGGTTCTAGCATATATGCACAGGTTCCTACTTCAGTTTCAAACCCTCCAAATAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAACGAGCATTGA 1014 0.4359 MGTQPQQTFREEEEEEMQGHGTTMSGQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGTVAKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKSERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTTDNSTDGGEGSSIYAQVPTSVSNPPNRPPSSPPLPGILKARVKNEH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00093 337 PANTHER TRANSCRIPTION FACTOR DP 17 337 - -
Gma11g00093 337 Coils Coil 188 222 - -
Gma11g00093 337 PIRSF Txn_factor_DP 3 337 IPR015648 GO:0005667|GO:0051726
Gma11g00093 337 MobiDBLite consensus disorder prediction 288 337 - -
Gma11g00093 337 CDD DP_DD 177 280 IPR014889 -
Gma11g00093 337 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Gma11g00093 337 MobiDBLite consensus disorder prediction 1 92 - -
Gma11g00093 337 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
Gma11g00093 337 Pfam Transcription factor DP 180 295 IPR014889 -
Gma11g00093 337 PANTHER TRANSCRIPTION FACTOR DP 17 337 IPR015648 GO:0005667|GO:0051726
Gma11g00093 337 SUPERFAMILY E2F-DP heterodimerization region 179 295 IPR037241 -
Gma11g00093 337 MobiDBLite consensus disorder prediction 288 312 - -
Gma11g00093 337 Gene3D Transcription factor DP 178 313 IPR038168 -
Gma11g00093 337 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Gma11g00093 337 MobiDBLite consensus disorder prediction 20 55 - -
Gma11g00093 337 Gene3D - 84 177 IPR036388 -
Gma11g00093 337 SMART DP_2 179 335 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00093 Gma-Chr11 766698 772727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00093 90 288 E2F-DP Transcription Factor Family AT5G02470 55.500 5.25e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma11g00093 DP 2.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00093 K04683 - gmx:100797603 614.379