Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00082 atgatgagaacaccaataagcagtgatgaaagtggtttgaagaaggggccatggagcccagaagaggacaaaatattagtggatttcattgagaaacatggtcatggaagttggagagcccttccaaggcttgcaggcttaaacaggtgtggaaagagttgcagactgaggtggactaattacctcaggcctgacatcaaacgcggaaaattctctgatgaagaagagcaactaatcatcaatttacattcagttctcgggaataaGTGGGCGGCTATAGCATCTCATCTGCCAGGGAGGACTGATAATGAAATAAAGAATTTGTGGAACACGCATTTAAAGAAGAAGCTAATGCAAATGGGGTTAGACCCAGTGACTCACCGTCCAAGAACTCATCACCTAAACCTTCTTAGCAACCTACAACAGATATTGGCTCTAATTAGGTTACAGTCAGATGCTAATAAACTCCAATTATTGCAAAACATATTTGAAGCCTCAAACTCAGACCCACTGCCAGATTCTTCTTATTCTTTGCTAAATGATGTTTTGGGGGGGTTGAATAATCTTCACTCCAATGATCTCCATAACCTTTATGATGGTAATTCACTTTCTGTCCAAAACTTTGATCAGAACTTGAATGGTGGCAGAAACGCTGAGCCTTCACCGTCATCAAACTCGCTTCCAAATCTGGTTTCAGCCTCACCTGATCGTTCCCCAGTTGTTAAGGAAGCACAAAACATATTGGTAAACTCGAAGGACTTTTCCACCTCCGCTTTTGAGTTAACGTGGGGAGATTTCATGGATGAAGAAGAAACAAACCAGACTTATTGGAAAGGTTTTATGGACCAACATTCTAACCAGACATGGTCGACTTTCCCATGA 882 0.2891 MMRTPISSDESGLKKGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHSVLGNKWAAIASHLPGRTDNEIKNLWNTHLKKKLMQMGLDPVTHRPRTHHLNLLSNLQQILALIRLQSDANKLQLLQNIFEASNSDPLPDSSYSLLNDVLGGLNNLHSNDLHNLYDGNSLSVQNFDQNLNGGRNAEPSPSSNSLPNLVSASPDRSPVVKEAQNILVNSKDFSTSAFELTWGDFMDEEETNQTYWKGFMDQHSNQTWSTFP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00082 293 SMART sant 14 64 IPR001005 -
Gma11g00082 293 SMART sant 67 115 IPR001005 -
Gma11g00082 293 MobiDBLite consensus disorder prediction 210 236 - -
Gma11g00082 293 Gene3D - 14 67 - -
Gma11g00082 293 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma11g00082 293 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gma11g00082 293 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gma11g00082 293 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gma11g00082 293 MobiDBLite consensus disorder prediction 210 233 - -
Gma11g00082 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma11g00082 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gma11g00082 293 Gene3D - 70 117 - -
Gma11g00082 293 PANTHER MYB TRANSCRIPTION FACTOR 2 284 - -
Gma11g00082 293 CDD SANT 70 113 IPR001005 -
Gma11g00082 293 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gma11g00082 293 CDD SANT 17 62 IPR001005 -
Gma11g00082 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00082 Gma-Chr11 660590 662394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00082 1 289 MYB Transcription Factor Family AT3G02940 47.095 2.36e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma11g00082 Myb_DNA-binding 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00082 K09422 - gmx:100808232 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02335 01 58315496 58317201 Gma11g00082 11 660590 662394 GST