Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00061 ATGGATTCGGAAGGCGAGTGTGTTAGAACACCAAAGATGGAAGCAGAAGGGGCTCTGAATTCAAAGATGAAGGGTGCTGGAAACGTGAGCAGTAAGGATATGATATTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCACAGCTGGAAAAGCACTTGAGCAGGGTTTGGTCGAGGAGCATTGAGACTAATCGCCCCAAAGAAGAGTGGGAGGTTGATTTGGCCAAATTGGATCTGCGATATGTTGTGGCTCATGGGGCGTATGGTACTGTATACAGGGGCACATATGATACCCAAGACGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTAGCTACTGCTGCTGAAACTGCTGCTTTACGGGCATCTTTTAGGCAGGAAGTTGCTGTCTGGCAAAAACTTGACCATCCAAATGTGACAAAATTTGTTGGAGCTTCGATGGGTACTTCAAATCTTAAGATTCCGCCAAAAAACCCTTTGAATGCCGACGAAGAGTCCCTTCCCTCTAGGGCATGCTGTGTTATTGTTGAGTTTGTCTCTGGTGGGACACTAAAGCAATATTTGTTTAAAAGTAGGAGGAGGAAACTTGCTTATAAGATTGTGATTCAGCTGGCTTTGGACCTTGCTAGGGGTCTTAATTATCTACATTCAAAGAAGATTGTTCATCGAGACGTTAAAACAGAGAATATGTTACTAAGTACTAGTCGGAATCTAAAAATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTATGAATCCAAGTGATATGACTGGTGAAACTGGAACCCTAGGATATATGGCCCCAGAGGTTCTGGATGGGAAACCTTACAACAGGAGATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCATCTGCAGTTGTTCGCCAGAATTTACGACCAGACATTCCAAGATGTTGTCCAAGCGCCTTAGCAAATATCATGCGGAAATGCTGGGATGCGAATCCAAACAAGCGTCCAGAAATGGAAGAGGTGGTGAGGATGCTTGAAGCACTTGATACTAGCAAAGGTGGTGGTATGATACCTGAAGATCAGAGTTCAGGTTGCTTTTGTTTTGCCCCAACCCGAGGGGACATGCATTCGCCAATTTACAATTGCATCACAGGCCAATACATGGCAACGACCCTTTTTCCATCTTCTACTCTTTTGGTTCCCGCAAGCTTAAAGGAAGCTAATCCCATAACCAGAAACTCATCCTCCAAGTTACTTGTAAACTGCAAAACACTGAAGGAGCTGAAGCAGTTGCATTGTGACATGATGAAGAAAGGGTTGTTGTGTCACAAGCCTGCTAGTAACCTCAACAAGCTTATTGCTTCTTCTGTTCAGATAGGTACCCTTGAGAGCTTGGACTATGCTCGAAATGCTTTTGGGGATGATGATGGAAACATGGCCTCCTTGTTCATGTATAACTGTCTTATTAGAGGTTATGCTTCAGCAGGGTTGGGTGACCAAGCAATCTTGCTTTACGTTCAGATGCTGGTGATGGGCATTGTGCCTGACAAGTACACTTTCCCTTTTTTGCTGAGTGCGTGTTCTAAGATTTTGGCGCTTTCTGAGGGTGTTCAAGTTCATGGGGCGGTTCTTAAGATGGGTTTGGAGGGAGATATATTTGTCAGCAACTCTTTGATACATTTCTATGCGGAGTGCGGGAAGGTTGACTTGGGACGAAAGCTGTTTGACGGAATGCTTGAGAGAAATGTTGTGTCTTGGACTAGTTTGATCAATGGTTATTCTGGGAGGGACTTGTCAAAGGAGGCTGTTTCTCTGTTCTTTCAGATGGTTGAGGCTGGTGTAGAACCTAATCCGGTTACCATGGTCTGCGTTATATCTGCTTGTGCCAAGTTGAAGGATCTTGAATTGGGTAAGAAAGTGTGTTCTTATATCAGTGAGTTAGGCATGGAACTTAGCACAATCATGGTGAATGCATTGGTTGATATGTACATGAAATGTGGGGATATATGTGCTGCGAGGCAGATTTTTGATGAATGTGCCAATAAGAATTTGGTTATGTACAATACTATCATGTCAAATTATGTGCACCATGAGTGGGCCAGTGACGTGTTAGTAATTTTGGATGAAATGCTGCAAAAGGGACCACGACCGGATAAGGTGACCATGTTATCTACGATTGCAGCCTGTGCACAGTTAGGTGATCTTTCTGTTGGGAAGTCATCCCATGCTTATGTCTTACGGAATGGACTTGAAGGTTGGGATAACATTTCCAACGCCATCATTGACATGTACATGAAATGTGGCAAAAGAGAAGCAGCTTGCAAAGTTTTTGAGCATATGCCAAACAAGACGGTGGTGACTTGGAATTCGTTAATTGCAGGTTTGGTTAGAGATGGTGACATGGAATTAGCTTGGAGAATCTTTGATGAGATGCTTGAGAGGGATCTTGTATCTTGGAACACTATGATCGGTGCATTGGTTCAAGTGAGCATGTTTGAGGAAGCAATTGAGCTATTCAGAGAGATGCAAAACCAGGGGATTCCAGGAGATAGAGTGACAATGGTGGGCATTGCTTCTGCCTGTGGATATTTAGGAGCTCTTGATCTTGCCAAGTGGGTATGTACTTACATTGAGAAAAATGACATTCACGTGGACTTGCAGCTTGGCACAGCTTTGGTTGACATGTTTTCAAGATGTGGTGATCCCTCAAGTGCTATGCATGTTTTCAAAAGAATGGAAAAACGGGATGTGTCTGCCTGGACTGCTGCCATCGGAGTTATGGCAATGGAGGGAAATACAGAAGGGGCTATTGAGCTTTTTAACGAGATGCTTGAACAAAAGGTGAAACCAGATGATGTTGTTTTTGTGGCACTATTGACAGCATGTAGCCATGGTGGCTCTGTGGACCAAGGGAGGCAACTTTTTTGGTCAATGGAAAAAGCCCACGGAATACGTCCTCATATTGTCCACTATGGATGTATGGTTGATTTGCTTGGTCGAGCTGGGCTGCTGGAAGAAGCTGTTGATCTCATACAAAGTATGCCAATAGAACCTAATGATGTTGTGTGGGGATCTCTACTAGCAGCTTGTCGGAAACACAAAAATGTTGAACTGGCACATTATGCAGCTGAAAAGTTAACACAATTGGCCCCTGAAAGAGTTGGGATTCATGTGCTGTTATCTAACATATATGCATCAGCTGGAAAATGGACTGATGTAGCAAGAGTGAGGTTGCAAATGAAGGAGAAAGGGGTCCAGAAAGTGCCTGGATCAAGCTCAATAGAAGTTCAAGGATTGATTCACGAGTTCACCTCAGGTGATGAATCACACGCAGAGAACACCCATATTGGATTAATGCTAGAGGAAATAAACTGCAGGCTAAGTGAGGCAGGGTATGTTCCTGATACAACCAATGTCTTACTTGATGTTGATGAGCAGGAGAAAGAGCATTTGCTCAGCAGACATAGTGAGAAACTAGCCATGGCTTATGGATTAATCACTACTGGTCAAGGAGATGAGGGGACATACTGA 3564 0.4377 MDSEGECVRTPKMEAEGALNSKMKGAGNVSSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSIETNRPKEEWEVDLAKLDLRYVVAHGAYGTVYRGTYDTQDVAVKVLDWGEDGVATAAETAALRASFRQEVAVWQKLDHPNVTKFVGASMGTSNLKIPPKNPLNADEESLPSRACCVIVEFVSGGTLKQYLFKSRRRKLAYKIVIQLALDLARGLNYLHSKKIVHRDVKTENMLLSTSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSALANIMRKCWDANPNKRPEMEEVVRMLEALDTSKGGGMIPEDQSSGCFCFAPTRGDMHSPIYNCITGQYMATTLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMVEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGDEGTY 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00061 1187 Gene3D Transferase(Phosphotransferase) domain 1 184 369 - -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Gma11g00061 1187 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 624 723 - -
Gma11g00061 1187 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 455 626 - -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 927 961 IPR002885 -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Gma11g00061 1187 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 718 1183 - -
Gma11g00061 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 797 828 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 567 595 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 930 962 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 696 729 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 828 861 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 901 929 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 495 527 IPR002885 -
Gma11g00061 1187 TIGRFAM PPR: pentatricopeptide repeat domain 595 628 IPR002885 -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Gma11g00061 1187 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Gma11g00061 1187 Pfam E motif 1044 1106 IPR046848 -
Gma11g00061 1187 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Gma11g00061 1187 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Gma11g00061 1187 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Gma11g00061 1187 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Gma11g00061 1187 Gene3D Tetratricopeptide repeat domain 413 545 IPR011990 GO:0005515
Gma11g00061 1187 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 830 860 IPR002885 -
Gma11g00061 1187 Gene3D Tetratricopeptide repeat domain 649 762 IPR011990 GO:0005515
Gma11g00061 1187 Gene3D Tetratricopeptide repeat domain 881 991 IPR011990 GO:0005515
Gma11g00061 1187 Pfam DYW family of nucleic acid deaminases 1142 1182 IPR032867 GO:0008270
Gma11g00061 1187 CDD STKc_MAP3K-like 84 356 - -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 795 829 IPR002885 -
Gma11g00061 1187 SMART serkin_6 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00061 1187 Gene3D Phosphorylase Kinase; domain 1 67 158 - -
Gma11g00061 1187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 592 IPR002885 -
Gma11g00061 1187 Gene3D Tetratricopeptide repeat domain 992 1061 IPR011990 GO:0005515
Gma11g00061 1187 ProSiteProfiles Protein kinase domain profile. 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00061 1187 Pfam PPR repeat family 592 641 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat family 927 974 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat family 494 539 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat family 794 826 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat 828 858 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat 696 725 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat 769 793 IPR002885 -
Gma11g00061 1187 Pfam PPR repeat 1000 1025 IPR002885 -
Gma11g00061 1187 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 624 723 - -
Gma11g00061 1187 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 718 1183 - -
Gma11g00061 1187 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 455 626 - -
Gma11g00061 1187 Gene3D Tetratricopeptide repeat domain 763 878 IPR011990 GO:0005515
Gma11g00061 1187 Gene3D Tetratricopeptide repeat domain 546 648 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00061 Gma-Chr11 506443 513931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00061 20 384 MAP Kinase Kinase Kinase AT3G22750 79.837 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma11g00061 PK_Tyr_Ser-Thr 9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00061 - - gmx:100805041 1602.42