Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00060 ATGGACACGCCAGAGAGGAATCAGATCACCGCTACTCTCTCTATGTTTGAGGATTCACCGGTTTTCAACTATATCAATAGTTTATCTCCTATAAAGCCCGTTAAGTCTGTTCCCATCAGTCAGACTTTCAATTCACTGAGCTTTTCATCCCCTCCATCGGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTTCTCCGGAGACATAACCCGTTGGGCACATCAAAGCCTAAGGTTTCTTCTGAAGATGTAATTAAAGTTCACTCAAGTGAAGAGACTCTTGCTGATACTACACGCGCACACCATAACTCAAGTAAATTACAGGAGGAAAACACTGGTAAAGGGATTTCATTAAGAGATGCTTCGCTTGAGCTATCTAGGGAGCACATAAGATTTTCAGATGAGCTACCGAAAGCTTTAAAATATAATTGTGGTAGCCCTGGCTATGATCATCCACCTTGTGGTGATGAGGCCAACTCTCTTTTGGAATTGCCTGGTGAGGCAGCAGAAAATGTTGGCTATGTTCAGGAAGGTTGTAAAACTGATTCAGTTGAGGGCGAAGTGCATCTTCAGGAAATATGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCCCCTGATATGCTAATTTTTAATTCCCCAGGTGAGGCAGAAGCTTTTAAGGGTCTAATGCACAAACCCTTGGACTCTTCTATTCGACTCAGCAAATTTATGTCTATGCTTCCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCAGTTGCTTCTGGTTCTGCCCATGAAATTGAAGATAATCATTCTGAGCCGATGACAGCCACAGGCACGAGCCAAACTCAAGATAATCTTGCCGATGTTGCATTAGTGACTAGCAATTCAAATGAGAAAGCAAACGACCAGCTTGTTTCAGTCACACACCGTACCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTTCAAAGGAAGAACTCTGATGATAATTCAAACATCGGTTTTAGTACATCTGAGTCTGATGAGAGGAATGTCGCTAATGAAAAGCAATTGCTTCCTGCAAAACGCAATGGGAATTTACAGAGGGGAATTTTGCAAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAACGGCACACAAGTTGAAAAATTGTCTTCTGGAAGACAACTCAGTCTGCCCAGCTCTACTTCTTTGCAAATCACTACAAGCCAAGAACATCAGCATCTATCATTGGTACCTGTATCATCTGAAAGAGAATTGGATCCATCAGACATTGGGGTTCATCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAGAATGAAAAGGCGTAAGTCGGAGACACCAGGAGACACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGATGCAAGAATGCTTTTGGTAGAAAGGATGGTTCTGCTCCTGTAGGCATAGAAACTGATCCAGAAGAAACAGAAGCCTCTGACAAGGGTATGGTAGAAAAAACTTTACAGAAAACTGAAATTCAGAATACTGAGAATCATCCAGATTCTGCTACAGTGTCAACACCATTACGGCTTTCCAGGCCATTGCTTCCGTTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCTCTGCATTATTTGCCAACCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCTCAAGCTAAGCATTTTCAAACTGTTCCAGATGAAGAAATGCCGGATATTCTGCGAGGTGATAGCTCTCCTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAACTGCGACTTGGGATTATCTCCTAGTCGCAGAGGTGGCAGGAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2325 0.4297 MDTPERNQITATLSMFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVSSEDVIKVHSSEETLADTTRAHHNSSKLQEENTGKGISLRDASLELSREHIRFSDELPKALKYNCGSPGYDHPPCGDEANSLLELPGEAAENVGYVQEGCKTDSVEGEVHLQEICQMEPKSEGPDCYWDSLIPDAPDMLIFNSPGEAEAFKGLMHKPLDSSIRLSKFMSMLPHSTINNGRKMHIVDSVASGSAHEIEDNHSEPMTATGTSQTQDNLADVALVTSNSNEKANDQLVSVTHRTIRRRCLDFEMANVQRKNSDDNSNIGFSTSESDERNVANEKQLLPAKRNGNLQRGILQGIGLHLNALAALKEYNGTQVEKLSSGRQLSLPSSTSLQITTSQEHQHLSLVPVSSERELDPSDIGVHPAEDCSQPSAYMAGEDFNQNSPRMKRRKSETPGDTEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRNSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAPVGIETDPEETEASDKGMVEKTLQKTEIQNTENHPDSATVSTPLRLSRPLLPLPFSSKGKPPRSFVTTISGSALFANQKLGKPNPLWSQAKHFQTVPDEEMPDILRGDSSPITCIKTSSPNGKRISSPNCDLGLSPSRRGGRKLILQSIPSFPSLTPHP 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00060 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 486 521 IPR005172 -
Gma11g00060 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 572 607 IPR005172 -
Gma11g00060 774 MobiDBLite consensus disorder prediction 340 359 - -
Gma11g00060 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 773 - -
Gma11g00060 774 SMART CXC_2 569 610 IPR033467 -
Gma11g00060 774 SMART CXC_2 483 524 IPR033467 -
Gma11g00060 774 MobiDBLite consensus disorder prediction 732 748 - -
Gma11g00060 774 MobiDBLite consensus disorder prediction 732 754 - -
Gma11g00060 774 ProSiteProfiles CRC domain profile. 484 609 IPR005172 -
Gma11g00060 774 MobiDBLite consensus disorder prediction 271 293 - -
Gma11g00060 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 773 IPR044522 GO:0003700
Gma11g00060 774 MobiDBLite consensus disorder prediction 98 117 - -
Gma11g00060 774 MobiDBLite consensus disorder prediction 340 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00060 Gma-Chr11 489453 493924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00060 16 773 CPP Transcription Factor Family AT4G14770 43.057 3.32e-159 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gma11g00060 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00060 - - gmx:100815907 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02364 01 58510661 58515336 Gma11g00060 11 489453 493924 GST