Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00048 ATGGAATCGGGGGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAGGGGGATGTGTTGGGTGCTACTGCTTCCACCTCTCGGAAGCTCTATGAATCCAAGAATAGGCCAAACATCAACGTGCCATTGAGTGATTCTGGATCAAGCGACGAGTCACCAGTGCCTCCTGGTAGAAGGCTTGGTCCCGAGACTATTCGAGTTTTCAATGGTTTCGCTGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGAAAGAGGTATAGAGTACAACGAATTAGGGGTAATGGTGAGGGTATTGCTGCGGAGAAAGGGTTGGAGCAGTGGGAAAGAAAGCGTAGTAAGTTGGTTGTGTACGATTTCGATGATTACAATGGCATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTCATGGAGGAGGAAGGTTTATGGGTTCAGTGCATGCTGCTAGAATTGGCATTGATAGGGAATTCAAAACAGGTTCAAGTGGACGAATCCTTGATAAGAGAAATAACTCTTATGGTGATAGGCCTGGTGGCTTGTATCCAGGGGATAATGTTGATCACAGTAGGTACAAGATAAACAGGGATGGACTCCGGGTACCTCTACGCTTGCAGAGGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAGAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCATCAGAACAGTATTATGATCATCACAAACCAGTGGAAAGAAGGCAAAGGTtgaagactgaagagactgctaagaggctgatgactgaagagactgctaagaggttgaagaccgaagaggctgcCAAAAGGAATGTAAATGTTCCAATTCGTCCTTTGTCATACTTGGAAATGAAACCTGTTGAGAAAACAGGATTACTCAAGAGGCCAGAGAAGAAAAGGATAGCATCAAGAAAATCATTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCTGGGAATAAGAAATACTGAAGCACGGAAGCCAGCAAAAAAAATAATATCTGAGGATGAGCAGACTCCTGTGCATGAAAAACTCCCAACCACAAGAACAAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGTGAACGAATAAGGGAGATGCTGCTGGATTCTGGTTGGACCATAGACTATCGACCCCGAAGGAACAGGGACTATTTGGATGCAGTTTACATTAATCCAGCAGGTACAGCGTATTGGTCTATCATCAAGGCCTATGAAGCACTTCAAAAGCAATTGAATGAAGATGCTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAAGTGCTCAATCAGCTAACTAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAAAAATATGATAGTGAAAGCGATAATGAAAAAGAGCCTCAAATAAGATCTGCCAGCCACAAGCGTGATATGAATAGTACGGATGGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGTAGTAAGTCAATGAAAAATAAAATGTTTGAAAATACCATTATCAGTGCTCCCTCTAAAATCCAGAATGCTACCAATCACTCAGGTGATGGAATAGAAAAATCATTATTTGGATGTGATCCTCAGATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTTCCATATACGGGCAAGCGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGACGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCCGGAAGCAAATTGCCGCAGCCGTATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATGCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGCGGTGATCCTAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGTTTGGATATACAGATGCTTCCTCCGGGTGAATGGCGTTGTATGAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGAAAAAGATGATGCATCTGTGTGTGTCCTACACATTTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCACTAAGGAGATGGATACCCTTCCTAATAACATCAATTCATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAGCTGGAATCGGGTTTTTCATGGTCTCTCATTCATAGGACAGATGACGACTCAGAGGCAGCTTGCAGGGGTATTAGCCAGAGGGTAGAATGCAATTCCAAGTTGGCTATTACACTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCATGGAACTCAGATAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCCGCCATTGAATCGACCCTTTGCTCTCTGAAGGTTGAAAAACTAGTTATTCCTGCCATTGCTGAAGTCACAAATACATGGACGACAGTTTTTGGCTTCACACATCTGGACAAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTGGAACAAGGAAACCATGAGGGTTCTGAGAAAATGGAAAATGAAGACGATGATTTTATCAAGACCAAAATGGAAAGTAGGTCAGATGTGGGTTCTTCAACTCCACAAGATCCTCATGGTAGTGATGATGTTAGTTCAAGTCCTGCTAATGAGACAAATAATGAATGCAGCGATGCTTCTCAAGAACTAAATAACCAAGTTTTGGTTGATGGGATTATCTGTTCCAAATCTCATTCTGAGGAAATGATGTCTGATCCAGTTTCAGATAAATGTATTTCTCCTTCTAGAACTAGTCTTAGTGAACTAGAAATGAAGAATAAAGTAGCGGCTGCTCCTCCTGTTGATAGATTAGATTCTTCTACCAAATGTCAATCCATTTCTCCGGTTGACACTTCTGTTAGTTGTCACCCAGTAGATATTCTGAAAGTTCAAACTTTGGTTCAGGAAAATACTTGTTGTGATCCATGTCCAGCAGAAGAAAACCTTGACAAGAAGTGTCACTCGTCCACTGCTATGAATTTTGATTCATTGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCAGACAATACTCTTCCTACTAAAGAGGTTTTTATGAATGACGCTGTTGAAGTTGTTCCTTCAGGGAATATATCTGAAGAGAATATTACAAAGGGGAATAATCGAAATGTAGATGAATCCAGTTCTGCTCTCAATCATGCTGATGAAAGTTTGTTGCAAGTGGGATCTGTTTCCAATGGTGAAATTGGATGTGAGAATGAAAAGGATTTACATTTGAACCCAGGAGTTACTTCAAATGAAATGTATTTTGATGAAAGTGGCATAAATGCTTCTGGTGATAGTTCCGAGAATGTTCTGGTCTAA 3933 0.4083 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDVLGATASTSRKLYESKNRPNINVPLSDSGSSDESPVPPGRRLGPETIRVFNGFAAASERGGSEISRKRYRVQRIRGNGEGIAAEKGLEQWERKRSKLVVYDFDDYNGMDVENMRRRHLDGHGGGRFMGSVHAARIGIDREFKTGSSGRILDKRNNSYGDRPGGLYPGDNVDHSRYKINRDGLRVPLRLQREKFNSDESIRVQGRNGVLKVMVNKKKVGGPSEQYYDHHKPVERRQRLKTEETAKRLMTEETAKRLKTEEAAKRNVNVPIRPLSYLEMKPVEKTGLLKRPEKKRIASRKSLSSKDSKGDEGDSDNSDTSLNLGIRNTEARKPAKKIISEDEQTPVHEKLPTTRTKEGKIKRGSGTEKQKLRERIREMLLDSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNEDANEAKPKGDSSSFAPIADEVLNQLTRKTRKKMEKELKKKKKYDSESDNEKEPQIRSASHKRDMNSTDGDNNEEKLSSFIKQGSKSMKNKMFENTIISAPSKIQNATNHSGDGIEKSLFGCDPQIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYTGKRTVLAWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHAEKIGFHSVDIDGGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCMNCTCKFCGIASGTSEKDDASVCVLHICNLCEKKYHDSCTKEMDTLPNNINSSSLSFCGKECKELSEHLKKYLGTKHELESGFSWSLIHRTDDDSEAACRGISQRVECNSKLAITLTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTQIAEMPFIGTRHIYRRQGMCRRLFSAIESTLCSLKVEKLVIPAIAEVTNTWTTVFGFTHLDKSLRQEMKSLNMMVFPGIDMLQKLLVEQGNHEGSEKMENEDDDFIKTKMESRSDVGSSTPQDPHGSDDVSSSPANETNNECSDASQELNNQVLVDGIICSKSHSEEMMSDPVSDKCISPSRTSLSELEMKNKVAAAPPVDRLDSSTKCQSISPVDTSVSCHPVDILKVQTLVQENTCCDPCPAEENLDKKCHSSTAMNFDSLELDINPVLDSEMADNTLPTKEVFMNDAVEVVPSGNISEENITKGNNRNVDESSSALNHADESLLQVGSVSNGEIGCENEKDLHLNPGVTSNEMYFDESGINASGDSSENVLV 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00048 1310 CDD NAT_SF 917 976 - -
Gma11g00048 1310 Pfam PHD-finger 722 764 IPR019787 -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 1047 1079 - -
Gma11g00048 1310 ProSiteProfiles Zinc finger PHD-type profile. 719 764 IPR019787 -
Gma11g00048 1310 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 908 978 IPR016181 -
Gma11g00048 1310 PANTHER PHD FINGER FAMILY PROTEIN 1 1209 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 1046 1079 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 176 200 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 41 63 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 357 397 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 491 523 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 315 343 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 478 527 - -
Gma11g00048 1310 ProSitePatterns Zinc finger PHD-type signature. 722 761 IPR019786 -
Gma11g00048 1310 SUPERFAMILY FYVE/PHD zinc finger 712 767 IPR011011 -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 41 72 - -
Gma11g00048 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 813 IPR013083 -
Gma11g00048 1310 SMART PHD_3 721 762 IPR001965 -
Gma11g00048 1310 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1209 - -
Gma11g00048 1310 MobiDBLite consensus disorder prediction 315 397 - -
Gma11g00048 1310 Pfam Tify domain binding domain 644 694 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00048 Gma-Chr11 410703 417918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00048 4 1037 PHD Transcription Factor Family AT4G14920 48.723 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma11g00048 TDBD 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00048 - - gmx:100801863 2537.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02382 01 58611466 58618481 Gma11g00048 11 410703 417918 GST