Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00043 ATGCTGGCCAATCATTTCCAAAACGGCATCGAAACGGCGAGGCTCGTTTGGTCGCGGATTCCTAATTCGGAAGAATCGCAGCTCCTCGACGACGCCGTTGGCATCCTTAAGAAGAACGACGGAGGCGGTGTCGAGAGCCTTGACTATGAAGTCATTGAGAATTTTGCTTATCGTGAGGAACAGGCGCAGAGAGGGAAGCTGTATGTGAGCTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATTTGTACAGGACTTGCTGCTGTTGTCATCAATATTGCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCAGTGACATTTAATATAATTCAGAAATCATATATTGCTGGATTTGTCGTATATGTCCTGATCAACTTGGCTTTGGTGTTTTCCTCTGTATATATTATCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGTGGAGGCCTTGCTCTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAACAGGGTGGATCTACTAAATATCATCTAAATTCAAGGTGGTTTCAAGTATTCAAAAGTGACCGGGATCGTCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTTGCTGCAGCATTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACCTCGGCTGTTGTGGCTGTTGTGGTCCGAGCTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACACTTTGGGTCCGGTGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGTTATTTCCAATGGCTATTATTGGGGTTATTGGAGGCCTACTAGGCTCTTTATTCAACCAGCTTACACTTTATATTACCACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAGCAGGGTCAAGATTATTGAAGCATGCCTTGTATCCATTTTAACATCAGCCATTTCATTTGGCTTGCCACTTCTAAGAAAATGTAGTCCTTGCCCTGATTCTGATCTTGCATCTGGTATTGAATGCCCACGACCTCCTGGAATGTATGGGAATTATGTAAATTTTTTTTGTAGCAAAGACAAGGAATACAATGATCTCGCAACTATTTTCTTCAACACACAGGATGATGCCATAAGGAATTTATTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCATTAGCAGTGATCACGTTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTCGTAAAGTATTACAGAAGGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGCTCAATGCGGATGACAGTATCTCTCTGTGTCATTATGGTTGAAATCTCAAATAACTTAAAATTTTTACCTCTTATTATGCTTGTTCTTCTTATATCGAAGGCTGTTGGTGATGCTTTTAACGAAGGTATCTATGAGGAGCAAGCTCAATTGAGGGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCTCGTGTTGTTAAGGTTTCTGACGTAGTTTCCATTCTGCGGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGTAGTCATTTATTGGTAATTCTGCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCAAGAGGTGGGGGCAGATCAATTAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTATTGATGATATACATCTAAGTTCAGATGACTTAGAAATGTACATTGATCTTGCTCCATTTTTGAATCCCTCACCATATATTGTACCAGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGTCAACTTGGTCTTAGGCATTTATTTGTTGTTCCTCGCCCATCATGTGTGGTTGGTTTGATAACAAGAAAAGATTTGTTGATTGAGGACAAAGAAAATGTGAATACGTTAGAGCTTCAGTCAACTAGTGTAAGAATTCCGCAACAGAATAAAAGATTGATGACAAGAAATATAGATGTGGAGCGCCCTTTGCTAAACGGACTGCTTCAAAATCAGATACCTGACTAA 2409 0.4139 MLANHFQNGIETARLVWSRIPNSEESQLLDDAVGILKKNDGGGVESLDYEVIENFAYREEQAQRGKLYVSYLLVVKWFFALLIGICTGLAAVVINIAVENFAGWKFSVTFNIIQKSYIAGFVVYVLINLALVFSSVYIITQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQQGGSTKYHLNSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELFPMAIIGVIGGLLGSLFNQLTLYITTWRRNHLHKKGSRVKIIEACLVSILTSAISFGLPLLRKCSPCPDSDLASGIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVITFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRRLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSCVVGLITRKDLLIEDKENVNTLELQSTSVRIPQQNKRLMTRNIDVERPLLNGLLQNQIPD 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00043 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 794 - -
Gma11g00043 802 SMART cbs_1 596 648 IPR000644 -
Gma11g00043 802 SMART cbs_1 710 758 IPR000644 -
Gma11g00043 802 SUPERFAMILY Clc chloride channel 54 577 IPR014743 -
Gma11g00043 802 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 754 - -
Gma11g00043 802 Pfam CBS domain 708 755 IPR000644 -
Gma11g00043 802 Pfam CBS domain 604 647 IPR000644 -
Gma11g00043 802 CDD ClC_6_like 45 575 - -
Gma11g00043 802 Gene3D - 596 760 IPR046342 -
Gma11g00043 802 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Gma11g00043 802 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 ProSiteProfiles CBS domain profile. 707 764 IPR000644 -
Gma11g00043 802 Pfam Voltage gated chloride channel 132 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma11g00043 802 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma11g00043 802 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma11g00043 802 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma11g00043 802 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma11g00043 802 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma11g00043 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 794 - -
Gma11g00043 802 Gene3D Clc chloride channel 69 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00043 Gma-Chr11 341100 349189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00043 1 775 Ion Channels AT5G26240 82.474 0.0 1243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00043 K05016 - gmx:100811908 1537.7