Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00040 ATGGAGCTTCAGAGGCGTCCAGATCAGTGCCTCCCGGAGAGGAAAGGGCAGAAGAGGAAGCTCGAGGAGGAATTCGATGACGACCCACAGATCTCCCCTCCTCCCACCGGCGACGCTCGCGACGCCCTCCTCTCCGACGTTAAGGAACAGGTTTCCCTCCTCGATTCCACTTTCTCCTGGAACGAACCCGATCGTGCCGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGAGGAAGTCGTTAACGTGATTGTTGAAGGAGGCGCCATTCCGGCGTTGGTTAAGCATCTTCAAGTGCCTCCTCTGCCTCTGCCCGAAACCGACCGTGTGCCAAGACCAATGCCGTTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCGCTTGGACTTCTCGCTGTCAAGCCAGAGCATCAACAACTCATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCACGAGAACAGCAGCATTAAGACTCGTGTCAGGAAGGAAGGCGGGATTCCACCGCTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTTTGCTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTCATTGGAAATCTGGTCCACTCTTCCCCTGATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTGCAACCTGTTATTGGACTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGagaggtgctgtccgacctctgatagagatgcttcagtcctctgatGTTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATGCCATTACTGAAGCTTCTTGACTCCAAAAATGGCTCTTTGCAACATAATGCTGCATTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAGGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGACGAGTTGCTTTAACTCTTGCTCACCTTTGTTCTGCAGATGATCAAAGAAAAATATTTATTGATTATAATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTATAACCCCAAGCAACAGCTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCTATGACTCTGTCTCCTGTAGATGCCGCACCCCCATCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGTTACCTTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATCTGCCTCCTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGAGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCCGATGATGAGATTTATATACACTGGATCAGTTGATATCACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAGGCCTTTAACGCTATATCATTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTATGATAAATTGAGTGGAAAGCCAGGACACTCTCATCTGATTCAGCGTATAATACCCGAGATCCAGAATTACTTTGTTAAAGCCCTTACAAAGGCCAATTCCAACATCCTGCCGTAA 2127 0.4466 MELQRRPDQCLPERKGQKRKLEEEFDDDPQISPPPTGDARDALLSDVKEQVSLLDSTFSWNEPDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQVPPLPLPETDRVPRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRKEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLCSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNVTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFEPMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHYDKLSGKPGHSHLIQRIIPEIQNYFVKALTKANSNILP 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00040 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 367 IPR000225 GO:0005515
Gma11g00040 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 703 - -
Gma11g00040 708 SMART BTB_4 542 639 IPR000210 GO:0005515
Gma11g00040 708 Pfam Armadillo/beta-catenin-like repeat 314 353 IPR000225 GO:0005515
Gma11g00040 708 Pfam Armadillo/beta-catenin-like repeat 194 227 IPR000225 GO:0005515
Gma11g00040 708 Pfam Armadillo/beta-catenin-like repeat 230 269 IPR000225 GO:0005515
Gma11g00040 708 ProSiteProfiles BTB domain profile. 542 609 IPR000210 GO:0005515
Gma11g00040 708 SUPERFAMILY ARM repeat 440 511 IPR016024 -
Gma11g00040 708 SMART arm_5 81 137 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 355 395 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 314 354 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 138 186 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 272 312 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 188 228 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 470 510 IPR000225 GO:0005515
Gma11g00040 708 SMART arm_5 230 270 IPR000225 GO:0005515
Gma11g00040 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 234 IPR000225 GO:0005515
Gma11g00040 708 SUPERFAMILY ARM repeat 61 412 IPR016024 -
Gma11g00040 708 Gene3D Potassium Channel Kv1.1; Chain A 523 671 IPR011333 -
Gma11g00040 708 Gene3D - 41 212 IPR011989 -
Gma11g00040 708 Gene3D - 213 415 IPR011989 -
Gma11g00040 708 CDD BTB_POZ_ARIA_plant 529 644 - -
Gma11g00040 708 SUPERFAMILY POZ domain 534 636 IPR011333 -
Gma11g00040 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 703 IPR044282 -
Gma11g00040 708 MobiDBLite consensus disorder prediction 1 41 - -
Gma11g00040 708 Gene3D - 420 517 IPR011989 -
Gma11g00040 708 Pfam BTB/POZ domain 536 637 IPR000210 GO:0005515
Gma11g00040 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515
Gma11g00040 708 MobiDBLite consensus disorder prediction 1 27 - -
Gma11g00040 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 149 199 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00040 Gma-Chr11 315566 323757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00040 239 473 U-box Gene Family AT3G46510 26.337 5.34e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma11g00040 BTB 5.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00040 - - gmx:100819832 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02392 01 58693471 58700568 Gma11g00040 11 315566 323757 GST
Gma11g00040 11 315566 323757 Gma10g02366 10 51282049 51291788 PCT
Gma11g00040 11 315566 323757 Gma20g01345 20 40440678 40448749 PCT
Gma10g02366 10 51282049 51291788 Gma11g00040 11 315566 323757 PCT
Gma20g01345 20 40440678 40448749 Gma11g00040 11 315566 323757 PCT