Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00021 ATGGCTTACGCTGCAATGAAGCCTACTAAGGCCGGCTTGGAGGAGCCTCAGGAGCAGATCCATAAGATTAGGATCACCCTTTCCTCTAAGAACGTCAAGAATCTCGAGAAAGTGTGCGCCGACCTTGTTCGTGGTGCCAAGGACAAGCGCCTCAGGGTGAAGGGACCTGTTAGGATGCCAACTAAAGTACTTAACATCACCACCAGGAAATCCCCGTGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAATTATTGATCTCTACAGTTCCCCTGATGTGGTTAAGCAGATTACTTCAATCACAATTGAACCGGGTGTTGAGGTCGAGGGTACTGAAGAAAGCAAAGGAGTTACACGTCAAGGGAGTGGTGGGCGTTGGGGTGTCCAGAGGAGGGAGGAGCTTTCGGGAACAATGCCCGTGAGGAACCAAACATCATTAGTGCCAATGATAAGAAATGAAACGTTAACGAGGGCTTCTGTGTATAAATATAAATATAATAGAAGGAAAATGAGTTATTACACAGAACCTGAGGTGAGAAAGATGGGAACAATTGAGGAGGATAAACATTGTTATTTTGAGGAAGATGATCATTCCAACTCCAAGGCTAATCTATTGTATCTCTATCCAAGAACCAGGCCCCATGTTGTCCACAGCCGCGCTGTGCCTGTGCCTGTGCCTGTGTAA 705 0.4709 MAYAAMKPTKAGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRIIDLYSSPDVVKQITSITIEPGVEVEGTEESKGVTRQGSGGRWGVQRREELSGTMPVRNQTSLVPMIRNETLTRASVYKYKYNRRKMSYYTEPEVRKMGTIEEDKHCYFEEDDHSNSKANLLYLYPRTRPHVVHSRAVPVPVPV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00021 234 SMART Ribosomal_S10_2 24 118 IPR027486 -
Gma11g00021 234 PANTHER RIBOSOMAL PROTEIN S10-RELATED 1 118 - -
Gma11g00021 234 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma11g00021 234 Pfam Ribosomal protein S10p/S20e 24 116 IPR027486 -
Gma11g00021 234 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma11g00021 234 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma11g00021 234 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma11g00021 234 SUPERFAMILY Ribosomal protein S10 22 116 IPR036838 -
Gma11g00021 234 TIGRFAM uS10_euk_arch: ribosomal protein uS10 21 116 IPR005729 GO:0003735|GO:0006412|GO:0015935
Gma11g00021 234 Gene3D Ribosomal protein S10 domain 6 118 IPR036838 -
Gma11g00021 234 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 118 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma11g00021 234 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00021 Gma-Chr11 119722 121769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00021 1 118 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 91.525 1.17e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00021 K02969 - han:110866803 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02421 01 58920369 58923049 Gma11g00021 11 119722 121769 GST