Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02747 ATGGCAACATCATCTTCAGCAGACTCTACAGTGATTGGAGTGATCGATCAGAAATTTGAAGGGGGCTATGTAGTTACCGTGACAATGGGTTCTGAGCAATTGAATGGTGTACTTTATTATGCTCAAGAGGACTCTGTATTATTGCCTGCACCATCCCATAACAACAACAATGCTGCTGCTGCTTCATTGCAGAAGAAGAAGAGACGCAGAAGCAAATCGGAAATAAAAAGGAGAAACCCTGCTCTTCCAAAACCCAAAAAAACTGGCTACAATTTCTTCTTTGCTGAAGAACATGCAAGATTAAAGCCATATCACCAAGGAAAGGAGACAGATATTGGGAGGATGATTGGTGAAAACTGGAGCAAGTTAACAGAGTCCGAAAAAATGGTGTATCAAGAGATGGCCAATAAGGATAAAGAGAGATACTTAAAAGAAATGGAAGAATATGTGGAGAAACTGAAGGCGGACCAAGTCATCGTTGATGCTGTGCCACTTCGACAATGGCCTCCTCAACAGGATACAGACATTCAAATGGAAGAAGCTGAGGCTGGAGAGGGAAGTTTTGATATGAATGCAATGTCTCTTATGGATTCAGAAGAGAGGTTTTCTTATTAG 615 0.413 MATSSSADSTVIGVIDQKFEGGYVVTVTMGSEQLNGVLYYAQEDSVLLPAPSHNNNNAAAASLQKKKRRRSKSEIKRRNPALPKPKKTGYNFFFAEEHARLKPYHQGKETDIGRMIGENWSKLTESEKMVYQEMANKDKERYLKEMEEYVEKLKADQVIVDAVPLRQWPPQQDTDIQMEEAEAGEGSFDMNAMSLMDSEERFSY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02747 204 CDD HMGB-UBF_HMG-box 83 147 - -
Gma10g02747 204 MobiDBLite consensus disorder prediction 49 88 - -
Gma10g02747 204 Coils Coil 132 156 - -
Gma10g02747 204 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 184 - -
Gma10g02747 204 SMART hmgende2 82 151 IPR009071 -
Gma10g02747 204 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 184 - -
Gma10g02747 204 Pfam HMG (high mobility group) box 83 149 IPR009071 -
Gma10g02747 204 Gene3D High mobility group box domain 63 161 IPR036910 -
Gma10g02747 204 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 83 150 IPR009071 -
Gma10g02747 204 SUPERFAMILY HMG-box 72 154 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02747 Gma-Chr10 54640638 54641426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02747 5 182 ARID Transcription Factor Family AT1G04880 54.450 1.13e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma10g02747 HMG_box 1.3e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02747 - - gmx:100820147 388.267