Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02687 ATGTCGGAAGCACCACCGTCTCAGCCACCGCCTCCAACCGCCAACGCGTCACCACCGCCGTACTGGTGCTACCACTGCGAGAAGCGCGTCTCCATCGAAACGCTCGCGAATCTCCCCGACGTCGTCTGCGGTGAGTGCAAGAACGGCTTCGTGGAATCCATCCACACGCCGTCGCGCTCTCGCTCCCCCTCCGCCTCCTCCGACGACCCCTACTTCGGCTCGCAGTTCCTCCAGGTCCTTCGCCTAATCGCTCAGTCGGCGCGTGACGACGACGCGTCGCCTCCGCCGCCGCCAAGCCGCTCTCCGGAGAACGATTTCCTCAGGATCGAGCTCGGTGGCTGGGACAACGATGAGGAGAACGACAACGACAACAACGACGACGAGGAGTTCGAGGAACACGAGGAGGCAGAGGATCGCTCCGGCAATGAGGATCCGCACGGAAGAGACGACGAGGATCTGAGAAGAAGGAGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTTGAGGACAATTCCATCGAGTTCCGCCTCCAGCTGCCGGAATCCGACCGCTACGTCGGGAATCCCGAGGATTACGTCGACGCGGCGGAGTACGAGGCGCTGCTGCATACGCTTGCGGAAAGCGACGGCGGAGGTAGGAGAGGAGCGCCGCCGGCGTCGAAGGCGGCGGTGGAGGCGTTGCCGACGGTGAAGGTTGCGTCCGAAAGCGAAGCCGTGGCGTGCGCTATATGTAAGGATTTGCTCGGTGTTGGAGACTTGGCGAAGAGGTTGCCGTGCGGGCATGGGTATCATGGAGATTGCATTGTTCCTTGGTTGAGTTCTCGAAATTCTTGCCCTGTTTGCAGGTATGAGCTACCAACGGATGATAAGGAATATGAGGAAGAGAGAGTGGTTAACTCTGCTTCGAGTTCCGGTGGAGATGGAAGTGCCATTGCTTGA 1002 0.6048 MSEAPPSQPPPPTANASPPPYWCYHCEKRVSIETLANLPDVVCGECKNGFVESIHTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDEENDNDNNDDEEFEEHEEAEDRSGNEDPHGRDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQLPESDRYVGNPEDYVDAAEYEALLHTLAESDGGGRRGAPPASKAAVEALPTVKVASESEAVACAICKDLLGVGDLAKRLPCGHGYHGDCIVPWLSSRNSCPVCRYELPTDDKEYEEERVVNSASSSGGDGSAIA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02687 333 MobiDBLite consensus disorder prediction 116 138 - -
Gma10g02687 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 309 IPR013083 -
Gma10g02687 333 MobiDBLite consensus disorder prediction 314 333 - -
Gma10g02687 333 Pfam Ring finger domain 262 303 IPR001841 -
Gma10g02687 333 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 325 - -
Gma10g02687 333 MobiDBLite consensus disorder prediction 113 151 - -
Gma10g02687 333 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 325 - -
Gma10g02687 333 MobiDBLite consensus disorder prediction 319 333 - -
Gma10g02687 333 SUPERFAMILY RING/U-box 257 309 - -
Gma10g02687 333 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Gma10g02687 333 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Gma10g02687 333 SMART ring_2 262 302 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02687 Gma-Chr10 54119894 54120895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02687 173 315 C3H Transcription Factor Family AT5G01980 49.333 1.22e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02687 - - gmx:100802200 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02687 10 54119894 54120895 Gma20g00995 20 36603929 36605346 GST