Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02640 ATGAAAAACTTTAGCAAGGCACTGATACAAGGAACTTTGAGTTTGCTGAGATGGGACTTTCGGCATAAGAGGAAGTTCCACTATCATCATCCAGGTGAGATGAACATCAGCATGCAACACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATATCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCACAGCTTTCCACTTGCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATTttggaagaaacaattgggacccaggttttgatttcGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAACTAATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATTGACGTGAGCAACATGCAATCAAACCCACTTATACAAGATGAAAACGAAGGGAACAACAACAGGAACAATAATCACTTATTCCATCCATCAGAACATGTCATCACTGATATGGACCACCGCAATATTGGTCTGTGTAATTCTCAACTGAACTTCATGCAGCAGTTCAACTACAACCAGCACAACAGAATGAAGAGCGATGCTGCTTTCTCTGAAGAATACCAAGCTGGTAATTCCTTCCTTCACGACGAGCAAACCAACCCAGAAGATGATCAGGAGCCTGGGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATACGTGGAGGCAAAAGATCAGAAGCAAGAGGAAGACAAGGACTTGATGAAAAACGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAATTAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCCAAGAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAACTCAATGATAGGCTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATATTGGTGTAGGTGCTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGATATGTCTCCAAACAAAAGCAGGAAGGTGCTACTGTCATTGATAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGAGAATGAGTATTTTGTGAAGGTTTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAATTGATGGAAGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTCTCAAATGTTTTTAAAGTGGAAAAAAAGGATAATGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGCCGGAAAATGGGGTGGGAAGGGATCAACATCAACTTCACAACCACCAGCAGATAGGTGCCTACCCGCACCAGTTTCATAGTTAA 1815 0.4364 MKNFSKALIQGTLSLLRWDFRHKRKFHYHHPGEMNISMQHLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFPVSSVASCRDITYPHPRTKPCDLLSQLSTCIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQCIEAVNHSMSFNIDVSNMQSNPLIQDENEGNNNRNNNHLFHPSEHVITDMDHRNIGLCNSQLNFMQQFNYNQHNRMKSDAAFSEEYQAGNSFLHDEQTNPEDDQEPGHEHDTYQKSLMTTDSQYVEAKDQKQEEDKDLMKNVVGRSDSMSDCSDQNEEEELDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNIGVGAELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGATVIDKQTQQMEPQVEVALIDENEYFVKVFCEHRPGGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDNETVEAEDVRDSLLELTRNRYRGWTHEMTATPENGVGRDQHQLHNHQQIGAYPHQFHS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02640 604 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 128 572 - -
Gma10g02640 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 425 IPR036638 GO:0046983
Gma10g02640 604 SMART finulus 369 418 IPR011598 GO:0046983
Gma10g02640 604 Coils Coil 402 432 - -
Gma10g02640 604 Pfam Helix-loop-helix DNA-binding domain 370 413 IPR011598 GO:0046983
Gma10g02640 604 CDD bHLH_AtAMS_like 366 431 - -
Gma10g02640 604 CDD ACT_UUR-ACR-like 499 562 - -
Gma10g02640 604 MobiDBLite consensus disorder prediction 334 374 - -
Gma10g02640 604 ProSiteProfiles ACT domain profile. 498 570 IPR002912 -
Gma10g02640 604 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 128 572 - -
Gma10g02640 604 Gene3D - 355 428 IPR036638 GO:0046983
Gma10g02640 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 412 IPR011598 GO:0046983
Gma10g02640 604 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 189 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02640 Gma-Chr10 53764688 53768324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02640 34 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.655 2.54e-147 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g02640 bHLH-MYC_N 1.2e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02640 - - gmx:100798282 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02640 10 53764688 53768324 Gma20g01044 20 37093131 37096343 GST