Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02637 ATGGAGGTGGCTTGCCAAATCCAGTGCTTATCAAGCCTTTACGGCAATGAATGGAAAGTGAATTGGACAAAACAGAACGGTGAGGTGTGGTTCGAAAAAGGTTGGAAAGAATTTGTTGAACATTACTCCCTAGATCAAGGACGTTTGATTTTCTTCAAATATGAAGGAACTTCTCAGATTGATGTACTCATACTTGACCAAAGTGCACTAGAGATAGACTATCCTTGTGACACTTGTGATGAAAACGACAACCTTGATCATACTCATGAGGCACCCGATATAATTTTTGGTGAATGGCCATATCAGAAGGCTGGACAAATGACAGAAGCTTATTCATTGGACCTGGACCATCTTTTGGTGTTCAAATATGTCGGGAGGTCAGAGTTTCAAGTTGTAATACTTGATCAAAGTGGCTTGGAAATGAGTTATCCTCTGACGGAAGCAACTTTAGATGGTGAAGACAATGGTAACTCTTTGCCCCAGAGTAAAAGGGCAAGTTCTCCCTTACCATTTTCTCCTTCCACTAAGAAGGTGAAAACCAACACAAGAAAGGAAACTAATGCTTATCCCCTCCAAGATGAAGATGTTGAAACTAAGTGTGCTCAATCTAAAAGGAACAAGGCCAAAAAAAGAGGTAGAAGAAGAATGATGTATGCCAATAAGAGATGCTCAAAATCAAAGGCTTTTCAAAGTGAGGAGTTGCTAGAAGATAATGAAAGTAGCACTGCTTTAGAGAGAGCCAACTCTTTCCGCTTTGAGAATCCCTTCTTCATTCGTCAAATGTATCCATCGTACATTCAAAAACATTTTATGGCCATGCCAGGTAATTTCATATCAGAAGGCCAACGAATGGAATTTGACAGTGTTACTCTTTGGAGCTCTGAGGAAAAAACATGGCATGTCAACTTCTATCTGAATCGTTCCAGTAAGCAAATAATACTAGGTGCTGGTTGGGGGGATTTTGTAAAGGATAATAACTTGAAAATAGGGAATGTATGTGTTCTTGAGCAAATTAAGAAACCAGGAATTTCATTTAGAGTTGTTATTTATCGTTACCTAGAAGAATCAAATCCTTCCAAGTTTCCAGATTCTGAATTTCGTAGATGCAACAACGAAGTGTCTGAGAATGACTTCACCCTCTCTATCAGCAAGCCTTGCCAATTCTATTGTATGTACGTACCAAAGAAATTCATCAGAAGCCATGAGATGGATCATATAAATGAAGTGAAGCTGCAAGTTGGGAAGAGATCATGGAATGTGAAGCTAGACTGTTACGGTAGATTCACTTCGGGTTTGCATGATTTTTTGAGTCAATGTAATGTGGAGGCCGGAGATGTTTGTCACTTTGAGTTGATTGATAAGAAGAAATTTGTGTTTGAAGTTAGAGTTACGAGATGCATCAGCATCGATTGA 1413 0.3914 MEVACQIQCLSSLYGNEWKVNWTKQNGEVWFEKGWKEFVEHYSLDQGRLIFFKYEGTSQIDVLILDQSALEIDYPCDTCDENDNLDHTHEAPDIIFGEWPYQKAGQMTEAYSLDLDHLLVFKYVGRSEFQVVILDQSGLEMSYPLTEATLDGEDNGNSLPQSKRASSPLPFSPSTKKVKTNTRKETNAYPLQDEDVETKCAQSKRNKAKKRGRRRMMYANKRCSKSKAFQSEELLEDNESSTALERANSFRFENPFFIRQMYPSYIQKHFMAMPGNFISEGQRMEFDSVTLWSSEEKTWHVNFYLNRSSKQIILGAGWGDFVKDNNLKIGNVCVLEQIKKPGISFRVVIYRYLEESNPSKFPDSEFRRCNNEVSENDFTLSISKPCQFYCMYVPKKFIRSHEMDHINEVKLQVGKRSWNVKLDCYGRFTSGLHDFLSQCNVEAGDVCHFELIDKKKFVFEVRVTRCISID 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02637 470 CDD B3_DNA 15 66 IPR003340 GO:0003677
Gma10g02637 470 Gene3D - 3 69 IPR015300 -
Gma10g02637 470 MobiDBLite consensus disorder prediction 148 191 - -
Gma10g02637 470 Pfam B3 DNA binding domain 257 343 IPR003340 GO:0003677
Gma10g02637 470 Pfam B3 DNA binding domain 390 462 IPR003340 GO:0003677
Gma10g02637 470 Pfam B3 DNA binding domain 10 59 IPR003340 GO:0003677
Gma10g02637 470 Gene3D - 235 354 IPR015300 -
Gma10g02637 470 Gene3D - 363 468 IPR015300 -
Gma10g02637 470 SUPERFAMILY DNA-binding pseudobarrel domain 253 351 IPR015300 -
Gma10g02637 470 SUPERFAMILY DNA-binding pseudobarrel domain 9 75 IPR015300 -
Gma10g02637 470 CDD B3_DNA 379 465 IPR003340 GO:0003677
Gma10g02637 470 ProSiteProfiles B3 DNA-binding domain profile. 256 353 IPR003340 GO:0003677
Gma10g02637 470 MobiDBLite consensus disorder prediction 151 177 - -
Gma10g02637 470 PANTHER B3 DOMAIN-CONTAINING 14 88 - -
Gma10g02637 470 PANTHER B3 DOMAIN-CONTAINING 108 351 - -
Gma10g02637 470 PANTHER B3 DOMAIN-CONTAINING 367 465 - -
Gma10g02637 470 CDD B3_DNA 255 351 IPR003340 GO:0003677
Gma10g02637 470 ProSiteProfiles B3 DNA-binding domain profile. 1 68 IPR003340 GO:0003677
Gma10g02637 470 SMART B3_2 257 353 IPR003340 GO:0003677
Gma10g02637 470 SMART B3_2 378 465 IPR003340 GO:0003677
Gma10g02637 470 SUPERFAMILY DNA-binding pseudobarrel domain 389 468 IPR015300 -
Gma10g02637 470 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 88 - -
Gma10g02637 470 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 108 351 - -
Gma10g02637 470 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 367 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02637 Gma-Chr10 53719658 53731621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02637 376 466 B3 DNA Binding Superfamily AT3G18990 30.928 1.43e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma10g02637 B3 3.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02637 - - ccaj:109795879 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02637 10 53719658 53731621 Gma20g01048 20 37125916 37133495 GST