Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02613 ATGGGATCCAAAATTCTTCCAAAATGGGCATCGAAGCCTTGCGTAATGGGAATCGACGAAGCTGGAAGAGGCCCCGTTTTAGGGCCTATGGTCTACGGTTGCTTATACTGCTCTCAGTCCTATCTGAAGACCCTTTCCACGTTGAGTTTTGCAGATTCTAAGACACTCAAGGAAGAGAAGAGGGAAGAATTGTTTGAAACTTTAAAACTCAATGATTCTATTGGATGGGATGTTGATGTCATTGACCCCCGGGAACTCTCCGCTAAAATGCTTAAGAAGAATAAGATTAACTTGAATGAGATTTCACATAGCTCTGCCATGGGCCTCATTGATAGGGTACTGAAAATGGGAGTGCTTCTAACTGAGGTTTATATAGATACAGTTGGAGATGCAGGGAAATATGAAATGAAGCTCTCTAATAGTTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGCCTTTACCCCGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGGGACCGTGCTTTAAGAGAATGGGTGCTTGATGAGACTGCTGAAAACATGCAGAGGAATTTTGGATCCGGATATCCTGGAGATCCCCAAACCAAGTCCTGGCTAGAGGATCACAAACATCATATCTTTGGATTTCCATCATTGGTCCGATTTAGTTGGGGAACCTGCAACTCTTATTTTAAAGATGCCGCAGAAGTGTTATGGGAGTCTGACAATTTAGATGAAGATGGTGGTGGAAGCAACAATAAGAATGGCAAGCGGCAATTGAAATTAAGCAATGTGGGTTTCACCACATCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTTATTTCTAA 894 0.4251 MGSKILPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAEVLWESDNLDEDGGGSNNKNGKRQLKLSNVGFTTSKRSEEIESSGKGRCRFFQARKLEHLTYF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02613 297 TIGRFAM TIGR00729: ribonuclease HII 15 227 IPR004649 GO:0004523|GO:0016070
Gma10g02613 297 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Gma10g02613 297 Gene3D Ribonuclease hii. Domain 2 186 235 IPR023160 GO:0004523
Gma10g02613 297 CDD RNase_HII_eukaryota_like 16 235 - -
Gma10g02613 297 Gene3D - 1 185 IPR036397 GO:0003676
Gma10g02613 297 SUPERFAMILY Ribonuclease H-like 14 231 IPR012337 -
Gma10g02613 297 Pfam Ribonuclease HII 16 226 IPR024567 GO:0004523
Gma10g02613 297 PANTHER RIBONUCLEASE 5 294 - -
Gma10g02613 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 294 IPR001352 GO:0003723|GO:0004523
Gma10g02613 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 13 235 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02613 Gma-Chr10 53513950 53516765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02613 5 297 Core DNA Replication Machinery Family AT2G25100 67.007 4.42e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02613 K10743 - gmx:100779875 604.364