Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02602 ATGCTCCCCATCACCTGCATTCTTTTTATGTGCCTTTTAAGTTCCTTCTCACCCCCAATCAACGCTCTTCTCAACCTCAACCTCACCCTGCCCCATCAATACCCTCACCCCGAATCCGTCGTCCAAGATATCCAACGGAAGGTGAATGCCTCACTACGGAGAAGGGAAATGCTGTCAAAGGACGAACAACAAGGCATGTCTTCGTGTCTGACAGGAAACCCCATCGACGACTGCTGGCGGTGCGAGCCGAACTGGGCGGCGGAGCGGCAGAAGCTGGCGGAGTGCGGCCTCGGGTTCGGCAAATACGCCATGGGCGGCAAAGGCGGGCAGATCTACATCGTGACGGACTCCTCGGACCGCGACCCTGCCAACCCCATTCCGGGCACCCTCCGCCACGCCGTCATCCAAGACGAGGCACTCTGGATAGTCTTCGCCGCCGACATGACCATCAACCTAAAACACGAGCTCATATTCAACAGCTACAAGACCCTGGACGGCCGCGGAGCCAACGTCCACGTCACCGGCCACGGCTGCATCACGCTCCAGTACGTCTCCAACATCATCATCCACAACATCCACATCCACCACTGCACTCCCTCCGGGAACACCAACATACGAGCCAGTCCAACGCACGTAGGGTGGAGAGGCAAATCGGACGGTGATGGGATTTCGATTTTTGGCTCGCGGAAGATCTGGATCGACCATTGCTCGCTGTCTTATTGCACGGACGGCTTGATCGATGCTATTATGGGGTCCACTGGGATTACTATTTCGAATAGTCATTTTGCGCACCATGATGAGGTGATGCTTCTTGGACACGATGATAAGTACTTGGTGGATAGGGGCATGCAGGTTACAATCGCGTTTAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGATGCAGGCTCGGTTATATCCACGTCGTTAATAATGACTTCACGCAGTGGAGGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGCAACCGTTACACGGCTCCCGGAGACCCTGATGCCAAGGAGGTGACGAAGCGCGTGGACACAGACGATAGAGAGTGGAGTGGTTGGAATTGGAGGACGGAAGGGGACATAATGGTAAATGGAGCGTTCTTTGTACCATCGGGTGCTGCGGGGCAGAGTGGCCAGTACCAAGAGGCCACCAGTGTGCAAGCCAAATCCGCCGTGCAAATAGACCAGCTCACTATGTACTCCGGTGTCTTGGGTGATCCCAGGGATAATGGGGATTTATATCCCGGCTTCAACGGCGGTGGGACCGTGACCGGAGCCACCAGCAAAGGCAACACTGACGGGTCCAGCAGTGACGATGGGGGGGACTTCTTCGGGATGATATTCAGAGGTGGCAGCAGCAGCAGCAGCAGCAGCCAAGCAGCGCCACCATCGTCCGTTCTATTTGTTTCAATCTTTTTGTCTCTTTTAATTATTTTTGTTTTGGACACTACCACCAACCATGCCTTTTTATTATCATTACTATGA 1515 0.5459 MLPITCILFMCLLSSFSPPINALLNLNLTLPHQYPHPESVVQDIQRKVNASLRRREMLSKDEQQGMSSCLTGNPIDDCWRCEPNWAAERQKLAECGLGFGKYAMGGKGGQIYIVTDSSDRDPANPIPGTLRHAVIQDEALWIVFAADMTINLKHELIFNSYKTLDGRGANVHVTGHGCITLQYVSNIIIHNIHIHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLVDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWRMYAIGGSANPTINSQGNRYTAPGDPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAAGQSGQYQEATSVQAKSAVQIDQLTMYSGVLGDPRDNGDLYPGFNGGGTVTGATSKGNTDGSSSDDGGDFFGMIFRGGSSSSSSSQAAPPSSVLFVSIFLSLLIIFVLDTTTNHAFLLSLL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Gma10g02602 504 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Gma10g02602 504 Gene3D - 72 415 IPR012334 -
Gma10g02602 504 SUPERFAMILY Pectin lyase-like 73 413 IPR011050 -
Gma10g02602 504 Pfam Pectate lyase 154 336 IPR002022 -
Gma10g02602 504 SMART amb_all 147 344 IPR002022 -
Gma10g02602 504 PANTHER PECTATE LYASE 18-RELATED 8 435 IPR045032 GO:0030570
Gma10g02602 504 PANTHER PECTATE LYASE 8 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02602 Gma-Chr10 53411252 53415222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02602 1 501 Polysaccharide Lyase AT3G53190 62.028 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02602 K01728 - gmx:100789303 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02602 10 53411252 53415222 Gma20g01088 20 37550003 37555412 GST