Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02584 ATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTTCTACCTTGGAGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTCCTCAAGCTTctgctcctgctcctgctcctgctcctgctGCAACTGGGGCACTGCCTGCATCAGTTACTGCACCTATATCTTCACCTTCTCCTGCTCCAGCCCCAACTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACCGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCCGAGCAAGCTGAAGCTCCACTTGTAGCCCAAGTGCCTGCAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTCCAGTTACCTCAGCTGGACCTAATGCTAATCCATTAGACCTTTTTCCCCAGGGTCTCCCTAACGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTGGATCACATGCATGAGTTCGAGGAACAATAG 1227 0.4629 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLEENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVPASTPPASVVPQASAPAPAPAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNPPADAPQTAQPAPVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGAEGNILGQMASAMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02584 408 Pfam XPC-binding domain 282 338 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma10g02584 408 MobiDBLite consensus disorder prediction 232 255 - -
Gma10g02584 408 MobiDBLite consensus disorder prediction 77 111 - -
Gma10g02584 408 Pfam UBA/TS-N domain 363 398 IPR015940 -
Gma10g02584 408 Pfam UBA/TS-N domain 179 214 IPR015940 -
Gma10g02584 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 174 217 IPR015940 -
Gma10g02584 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 360 401 IPR015940 -
Gma10g02584 408 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gma10g02584 408 SUPERFAMILY UBA-like 346 405 IPR009060 GO:0005515
Gma10g02584 408 MobiDBLite consensus disorder prediction 77 156 - -
Gma10g02584 408 MobiDBLite consensus disorder prediction 232 256 - -
Gma10g02584 408 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gma10g02584 408 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 407 - -
Gma10g02584 408 SMART ubq_7 1 75 IPR000626 GO:0005515
Gma10g02584 408 SMART CBM 280 323 IPR006636 -
Gma10g02584 408 CDD UBA1_Rad23_plant 170 219 - -
Gma10g02584 408 PRINTS DNA repair protein Rad23 signature 308 330 IPR004806 GO:0006289
Gma10g02584 408 PRINTS DNA repair protein Rad23 signature 357 373 IPR004806 GO:0006289
Gma10g02584 408 PRINTS DNA repair protein Rad23 signature 374 388 IPR004806 GO:0006289
Gma10g02584 408 PRINTS DNA repair protein Rad23 signature 389 404 IPR004806 GO:0006289
Gma10g02584 408 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 407 - -
Gma10g02584 408 Gene3D - 1 80 - -
Gma10g02584 408 Gene3D - 169 219 - -
Gma10g02584 408 Gene3D - 355 402 - -
Gma10g02584 408 Gene3D - 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma10g02584 408 SUPERFAMILY UBA-like 173 224 IPR009060 GO:0005515
Gma10g02584 408 CDD Ubl_Rad23 1 74 - -
Gma10g02584 408 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Gma10g02584 408 SUPERFAMILY XPC-binding domain 279 344 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma10g02584 408 SMART uba_6 176 216 IPR015940 -
Gma10g02584 408 SMART uba_6 363 400 IPR015940 -
Gma10g02584 408 TIGRFAM rad23: UV excision repair protein Rad23 1 406 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02584 Gma-Chr10 53272385 53277024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02584 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 1.15e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02584 K10839 - gmx:100818012 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02584 10 53272385 53277024 Gma20g01107 20 37717074 37720772 GST