Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02579 ATGTCCGAGTTTCGAAAACAACCGGCTTCTAGACCGAAGCAAAAGCTTCGCCAACAGCACTCCTCGAAAGAGTCAAAGGCGATGAGAAAACTTCGCATCATTTGCGACGATCCTGAGGCTACTGATTCATCCGAAGATGAGTCTGAGAGGGTTCAGAAGCCGAGAAGAGTAAAAAGAAGCGTGTTGGAGATGTCTCTTCCCCCTCTCCCTCAAACATTCACCACCACTACTCCTGAAACTAGCTCCTGTGAGGTGAATAGCAGCAAAAATGCAACATTGAAGGTTTGCACTGAAGGTCAACCCCAGAGCAAGAAGAGGGTTTTGACTCACACTCCATCAACGAGAAGGAGCACTTGTGGGAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCAGAAATTCGTGACCCGTTTCAGTGTACTCGTATATGGCTTGGCACTTTCAACACTGCAGAAGAGGCTTCCAAAGCCTATGAAACCAGAAGGCTTGAGTTTGAAGCCATGGCAAAGACTCAAACTCTAAAAACTGGTTCTGAACCTTTGTCTACAACTTCTGATAAGAGTAACTGCTGTAACTCCTCTGCTGCTGCCGCCGCCGATGTGTCTGTGTCTGAAAAGTTTTCTACTACTTCTGATGACTCGGAAGAGAGTATGTTGTCACACAATTCACCATCCTCTGTGCTTGAGTTGGATACCTCGGCTTCCAAATCCGTTGAGAAGGGTAATGGTTCAACTGAGGAAGCTACTGGGGCTAATAATTTGGTGGCTGAACTTGCAGGGCTTGAGATACCAGATTTGAGTCTGTTGAACCTGCCACCACCACCATCTGTTGCTGCGGATGCTGCTGGGATTGAGCCAAATTTTGGGCTTGATTTTGATTGGCTGTCGTTTAATGATTATGGACAGGGTTTTGAGGATTTCGGTGGCTTGGAGAACATTCATATTGGTGGGTTTGATGACACTGAGCCTAGTGAGCTTCCTGACTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAGGAACCCCTCAATATACCTTGTGCCTAA 1068 0.4644 MSEFRKQPASRPKQKLRQQHSSKESKAMRKLRIICDDPEATDSSEDESERVQKPRRVKRSVLEMSLPPLPQTFTTTTPETSSCEVNSSKNATLKVCTEGQPQSKKRVLTHTPSTRRSTCGKYRGVRQRKWGKWAAEIRDPFQCTRIWLGTFNTAEEASKAYETRRLEFEAMAKTQTLKTGSEPLSTTSDKSNCCNSSAAAAADVSVSEKFSTTSDDSEESMLSHNSPSSVLELDTSASKSVEKGNGSTEEATGANNLVAELAGLEIPDLSLLNLPPPPSVAADAAGIEPNFGLDFDWLSFNDYGQGFEDFGGLENIHIGGFDDTEPSELPDFDFGDFGADEFAGWIEEPLNIPCA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02579 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 355 - -
Gma10g02579 355 MobiDBLite consensus disorder prediction 205 252 - -
Gma10g02579 355 Gene3D AP2/ERF domain 120 176 IPR036955 GO:0003700|GO:0006355
Gma10g02579 355 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Gma10g02579 355 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Gma10g02579 355 CDD AP2 121 161 IPR001471 GO:0003700|GO:0006355
Gma10g02579 355 ProSiteProfiles AP2/ERF domain profile. 121 180 IPR001471 GO:0003700|GO:0006355
Gma10g02579 355 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Gma10g02579 355 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gma10g02579 355 MobiDBLite consensus disorder prediction 1 68 - -
Gma10g02579 355 SUPERFAMILY DNA-binding domain 121 168 IPR016177 GO:0003677
Gma10g02579 355 MobiDBLite consensus disorder prediction 17 60 - -
Gma10g02579 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02579 Gma-Chr10 53226493 53227560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02579 23 354 AP2-EREBP Transcription Factor Family AT1G68550 34.897 2.18e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma10g02579 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02579 - - gmx:100306276 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02579 10 53226493 53227560 Gma20g01115 20 37790335 37791441 GST