Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02577 ATGAGTTCGGCTACTAAGAACGCGGCAAACGCGGTTGGGGCCAAAACGGCAAGAGCATGTGACAGCTGCATAACCAAACGTGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAGGCCTGCGACTCTTCTGTTCACTCGGCGAATCCTTTGGCTCGAAGACACGAACGAGTCCGCTTGAAAACGGCGTCCTACAAGTCCACTGATGaacaacaacaacaacaacaacaacaacCTCCCACGTGGCACACTAAGAAACCTCGAACGCCGAGGCACGGGAAACATTCTCGTAACAACAACCCTTTCCATTTGGTCCCTGAAGAGGGTTCGGAGGAGGCGAATTCCCATGATGAGAACGAGGAGCAGCTTCTTTATAGGGTCCCCATATTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCTCCTTCTCCTGTTACTTCAACTGATCAAGGAGTAGTTGCTGCTGCTGAGGTTGAATACAAAGGGTTTCAAAGCAATGGTTTTTGTAGCAATAGCAGTGAGATGGAAAACTTGCATGGGATGCTTCCTTCTGATGCAGAACTTGCTGAGTTCGCTGCTGATGTGGAGAGCTTGTTGGGTAGGGGGCTTGAAAACGAGTGCGTGGGGATGGAAGAATTGGGACTGGTTGATGCGAAAGAGGAGGAGTGTTCGGTAGGTAGTGGGAAGGTGAAGATGGAAGATCAGGAAGAGAGCCCTCTGGTGGAGATGGAGATGGATATGGTCGTGGGCAGAGATGATCAATCGTTTGAGTTGAGCTTTGATTATGAAACGTGTGAAGAGGTGAAGGTTTGTGATTTGGGATTGGGGAATGAATTAGGAGCGAAGAAAGAGAATGATGATGAGGTGAAAAAGAACAAGATTTCGTTGCAGCTAGACTATGAGGCGGTAATCATCGCCTGGGCTAGCCAAAAATCTCCGTGGACCACCGCTGACAAACCAAACTTGGACCCTGATGAGTGCTGGAAACAATGCATGGGAAGTTGCGAAACGGCATATCATCATCCTTGCGGTGAAATGGGTGGATTTGGGATTCATCCAGTGATAATAGACGGGGGCAGAGAGGCGAGGGTGTCAAGATACAGAGAGAAGCGCCGAACGAGGTTGTTCTCGAAGAAAATAAGGTACGAAGTTAGGAAATTGAATGCTGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGGGCTTCCTTTGCACCACCAACATTTCCTTTGCTAAATAAATAA 1260 0.4762 MSSATKNAANAVGAKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQQQQQPPTWHTKKPRTPRHGKHSRNNNPFHLVPEEGSEEANSHDENEEQLLYRVPIFDPFVAELCGTNSSPSPVTSTDQGVVAAAEVEYKGFQSNGFCSNSSEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEELGLVDAKEEECSVGSGKVKMEDQEESPLVEMEMDMVVGRDDQSFELSFDYETCEEVKVCDLGLGNELGAKKENDDEVKKNKISLQLDYEAVIIAWASQKSPWTTADKPNLDPDECWKQCMGSCETAYHHPCGEMGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPPTFPLLNK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02577 419 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gma10g02577 419 Pfam CCT motif 364 406 IPR010402 GO:0005515
Gma10g02577 419 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gma10g02577 419 MobiDBLite consensus disorder prediction 67 86 - -
Gma10g02577 419 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Gma10g02577 419 CDD Bbox1_BBX-like 19 62 - -
Gma10g02577 419 ProSiteProfiles CCT domain profile. 364 406 IPR010402 GO:0005515
Gma10g02577 419 MobiDBLite consensus disorder prediction 66 121 - -
Gma10g02577 419 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 412 - -
Gma10g02577 419 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02577 Gma-Chr10 53185802 53187575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02577 6 406 C2C2-CO-like Transcription Factor Family AT1G25440 45.921 3.90e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma10g02577 zf-B_box 8.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02577 - - gmx:100782921 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02577 10 53185802 53187575 Gma20g01117 20 37835955 37838070 GST