Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02535 ATGGAGAAGGTTTGTGAATTCTGCACAGCTTTGAGGCCACTTGTTTACTGTAAGGCTGATGCAGCATATCTTTGTCTTTCCTGTGATGCAAAGGTGCATTTAGCAAATGCAGTGTCCGGCCGGCACCTCCGGAACCTCGTGTGTAACTCATGCGGATACCACCTTGCTTATGTTCTGTGTTTGGAACACAAAATGTTGATATGTCGTGACTGTGACCAAAAGTTGCACAACATTTCTTTGCCACATAAGAAACGAGCTATCAGAAGTTTCATGGGTTGCCCTTCTGCTAAAGACTTTGCAGCACTCTGGGGGGTTGAATTGAATGAGATTGAAAACAGTGCCAGTCAGGATCAGTTTGATTCAGTTTCTTGTGTTTCTGCAGATTTAAATGTTGCACAAGTTTCAGGAAAGCCTGGCATTCAAACTGAGGTCCCTTCAATGCTATCTGGGGCCAAACTTGATGGGGGAGGATCAACCAGTCAACAAGGTCAGATATTGTATAGTGATCAAAAGCGTCAAACGATTCTGCAGCAGATTATTGATTTTAAATGGCTTCAACAAAATGAGGAGATTGATTATTCTGCAAAGATCAATAGGCTACAAGAAAAAGATTCATCTCCTTCAGTATATCAGACTCTTAAGAAATTGGACGACAAATTCAATGAGCAAGCACAAAATTCCCAAGATCTTGCTACTAATGTTCTGGAAAAAGACTGTCCCATTATGGAGCTGAATCCTGAAACTTTGCCTTCTACGTTTTCTCAACTTGACAATTTATATTCTTCTTCAACTATCGATCTTCCCTTGCATGGAGAATTGTTCTGGACATGCAAAAGTCCACTTCAAAGTAATCAGTTGTGGTCCCAAAATATTCAAGACCTTGGGATATGCAAAGAACTTGTTTGTCAAGATGATTTTAACATCCCTGATGTTGACTTAACTTTCCAAAACTATGAGGAACTATTTGGAGGAGATCAAGATCCAATTAGAATACTGCTTGATGATCAAGATGTCTCCTGCTCTTCTTTAGAGAAGGATAAGTCAGTTGACAAGTCAGTTATTGACAATCCAAGTGCAATGGAGGAATCTTCTGCAGCTGCGTCCATTACTATCTCCCAATCTGATCTTGACAACAAGGATATGAATCCTCTCAGCCAGTACTGTCCAAGAAGCATGGATCCTGCTCATGCAATTCGACCATTTGATTCAACTATACCATTCTCTGTTCTGAGATTCAATGAGGAAAGCAGTTGCACAAACCATGATGACAGTGCCCTTTCTCCCTACAGTGAAGGGAGGGCTTATTCAGAGAAGACTCTCAGAACCAACAGCGAGCACCGAGAAAAAAAAATGCATAACAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGAGGCGGCGCCTCCGCCGGTCAAATTCCGTCAACCGGCGGCCTCTACAGTTCTCTGTACTCGGCACTGTCGAACGAGAACCTTCCATCGCTCTCCGCGAGCTGCAGCAACGGAAGCGGCGGTGGCGTTTCGATGTATCCTTACTCGGAGTCAATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGTCTGAATCGCCTCGTTGAAACTTCGAAGGAGGTGGAGGCTCTGAGGGAGGAGAATGGCCTGCTCCGAGCCGCGAACAAGGAGCTCCAGAAGCAGCTGCACCTCGTTATCCAGGCTTCGCTGGAGAATCACTACGGCGGCGGCGACGGAGGCTCCTCCGGCCAGACGCAACCGACTCTGTTCAATGTTTTGCATGGCTTCCGCGGCCTCCACATTGGGGAAGGGAATAAAGAGAATTATGCAGATTGGAATAACAATAATCTCAATATCATGAATAATAATAACAGCAACAATAAGGAGCTGCAGGAGATTTCGGAGGAGAGTCCAACGAGCGTGATTGAGAATAACAACGTGGTGGAAGTGGAGAGGTTCTCGCTCCCTAAGAGCATTTCTGTGAGGTCCAATGGCTACTTGAAGACGGCTCAGTCCGCTGCTCTCGCCCCCAATAACAGCAATGCCACTCGCAACAAAGGCGCCACTCGCCCACGCGCCTCCGCCACTCCACCTGAACCCGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGATAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAATAAGTGGCAGGAAACTGGAACATGTCCATATGGAGACCACTGCCAATTTGCTCATGGTATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAAGTCTGCAGAATGGTCCTTGCTGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGATCAATGAAGCTCGAAAGATAA 2433 0.4632 MEKVCEFCTALRPLVYCKADAAYLCLSCDAKVHLANAVSGRHLRNLVCNSCGYHLAYVLCLEHKMLICRDCDQKLHNISLPHKKRAIRSFMGCPSAKDFAALWGVELNEIENSASQDQFDSVSCVSADLNVAQVSGKPGIQTEVPSMLSGAKLDGGGSTSQQGQILYSDQKRQTILQQIIDFKWLQQNEEIDYSAKINRLQEKDSSPSVYQTLKKLDDKFNEQAQNSQDLATNVLEKDCPIMELNPETLPSTFSQLDNLYSSSTIDLPLHGELFWTCKSPLQSNQLWSQNIQDLGICKELVCQDDFNIPDVDLTFQNYEELFGGDQDPIRILLDDQDVSCSSLEKDKSVDKSVIDNPSAMEESSAAASITISQSDLDNKDMNPLSQYCPRSMDPAHAIRPFDSTIPFSVLRFNEESSCTNHDDSALSPYSEGRAYSEKTLRTNSEHREKKMHNKDACSPSSNGGFGGGASAGQIPSTGGLYSSLYSALSNENLPSLSASCSNGSGGGVSMYPYSESIQKHQDMVNRQSMCLNRLVETSKEVEALREENGLLRAANKELQKQLHLVIQASLENHYGGGDGGSSGQTQPTLFNVLHGFRGLHIGEGNKENYADWNNNNLNIMNNNNSNNKELQEISEESPTSVIENNNVVEVERFSLPKSISVRSNGYLKTAQSAALAPNNSNATRNKGATRPRASATPPEPVQKVYVRGGQKEEEPLEMIVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRSMKLER 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02535 810 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 726 751 IPR000571 GO:0046872
Gma10g02535 810 SUPERFAMILY CCCH zinc finger 759 793 IPR036855 GO:0046872
Gma10g02535 810 Gene3D - 759 795 - -
Gma10g02535 810 Gene3D - 720 758 - -
Gma10g02535 810 ProSiteProfiles Zinc finger C3H1-type profile. 725 753 IPR000571 GO:0046872
Gma10g02535 810 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 437 - -
Gma10g02535 810 SMART bboxneu5 48 87 IPR000315 GO:0008270
Gma10g02535 810 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gma10g02535 810 MobiDBLite consensus disorder prediction 418 464 - -
Gma10g02535 810 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Gma10g02535 810 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 437 - -
Gma10g02535 810 ProSiteProfiles Zinc finger C3H1-type profile. 763 791 IPR000571 GO:0046872
Gma10g02535 810 MobiDBLite consensus disorder prediction 357 384 - -
Gma10g02535 810 SUPERFAMILY CCCH zinc finger 722 757 IPR036855 GO:0046872
Gma10g02535 810 MobiDBLite consensus disorder prediction 438 455 - -
Gma10g02535 810 SMART c3hfinal6 763 790 IPR000571 GO:0046872
Gma10g02535 810 SMART c3hfinal6 725 752 IPR000571 GO:0046872
Gma10g02535 810 Coils Coil 534 561 - -
Gma10g02535 810 MobiDBLite consensus disorder prediction 356 384 - -
Gma10g02535 810 MobiDBLite consensus disorder prediction 671 690 - -
Gma10g02535 810 CDD Bbox1_BBX-like 4 44 - -
Gma10g02535 810 MobiDBLite consensus disorder prediction 671 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02535 Gma-Chr10 52662716 52677866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02535 482 805 C3H Transcription Factor Family AT1G68200 46.847 1.21e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma10g02535 zf-CCCH 7.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02535 - - gmx:100819787 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02535 10 52662716 52677866 Gma20g01171 20 38554506 38563013 GST