Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02518 ATGTCCTCTGCAAAAACACCAAGGTCTGCTTCGCCTTCTCCTGTTAGAAGCCGTCGAAGTCGATCAAAGTCATTATCAAGGTCCAGGAGAAGTCGTTCCAGGAGTCAAGATTCTGCTGATGTGGAGAATCCTGGAAATAATTTGTATGTTACAGGCTTGTCCACAAGGATAACTGACAGTGATCTTCACAAGTATTTCAGTAAAGAGGGAAAGGTTGTCGACTGCCACTTAGTAAAAGATCCTCATACAAAAGAATCTCGTGGATTTGGTTTTGTAACTATGGAAACTAATGATGATGCTGAGTGCTGTATCAAGTATTTGAACCGCTCTGTTTTTGAAGGTCGGCTGATAACTGTGGAAAAGGCAAAGAGAAATCGTGGCAGGACTCCAACTCCTGGCAAATACTGTGGTCCAAGAGATAAGCGGGGACAGGGAGGGAGACGATCTCATAGTTACTCACCTAAGCGATGGCAGGATAGAGGTTACCATTCAAGGGACCGGCGAGGACGATCTCGTTCTCCATATCATAGGAGGGTGGAAGATTACTCTGACACACATAGGAGGCAGAGGGATTAG 576 0.4531 MSSAKTPRSASPSPVRSRRSRSKSLSRSRRSRSRSQDSADVENPGNNLYVTGLSTRITDSDLHKYFSKEGKVVDCHLVKDPHTKESRGFGFVTMETNDDAECCIKYLNRSVFEGRLITVEKAKRNRGRTPTPGKYCGPRDKRGQGGRRSHSYSPKRWQDRGYHSRDRRGRSRSPYHRRVEDYSDTHRRQRD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02518 191 MobiDBLite consensus disorder prediction 1 19 - -
Gma10g02518 191 MobiDBLite consensus disorder prediction 1 51 - -
Gma10g02518 191 PANTHER OS08G0385900 PROTEIN 4 185 - -
Gma10g02518 191 MobiDBLite consensus disorder prediction 122 191 - -
Gma10g02518 191 CDD RRM_RBMX_like 45 124 - -
Gma10g02518 191 SUPERFAMILY RNA-binding domain, RBD 38 151 IPR035979 GO:0003676
Gma10g02518 191 MobiDBLite consensus disorder prediction 140 191 - -
Gma10g02518 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Gma10g02518 191 Gene3D - 2 130 IPR012677 -
Gma10g02518 191 SMART rrm1_1 47 120 IPR000504 GO:0003723
Gma10g02518 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Gma10g02518 191 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 4 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02518 Gma-Chr10 52513922 52517420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02518 16 128 Eukaryotic Initiation Factors Gene Family AT2G23350 28.319 8.45e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02518 K12897 - gmx:100798472 324.324