Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02490 ATGTCTTTTTTACATGGATTGCTAAAAAAATTATTGTTTGACATGATTTTATTGACAATCAAGAGCAAATCCCAATTCGACAATGGCGACATTCTCATCTCCGGCGACGCCAAAACGAACAACATTCTCTACTGCACTGGCCGATCGGTCATTATACGCAACCTCGACAACCCACTGCAGGTGTGGGTGTACTGCGAGCACGCCTACCCAGTCACGGTGGCGCGCTACTCCCCCAACGGCGAGTGGATCGCCTATGCTGACGTGTCCGGCACCGTCCGCATATGGGGGACCCACATCGAGTTCTTTCTCAAGAACGAGATCGTTGCCTGTGGGGACGGCAAGGGCAAGTCCTTCGTTCGCGCCTTTATGTGGGATTCAGGTTCCACTGTTGGAGATTTTGATGGCCATTCACACCGAGTTTTAAGTTGTGCATTTAAAACAACTAGGCCATTCCGCATTGTTACATGTGGAGAAGATTTTTTGGCGAATTTTTATGATGGTCCACCGTTCAAGTTCAATATGTCCATCAGGGACCATACGAATTTTGTCAACTGTGTTAGATTTTCTCCAGATGGGAGCAAATTCATTACTGTTAGCTCAGGTAGAAAGGGTACTATATATGATGGAAAGACAGGGAACAAACTTGGTGAGTTGTCCATGGAGGATGGTCACAAAGGCAGCATATATGCTGTTAGTTGGAGTCCTGACAGCAAACAGGTTCTTACTGTTTCCGCTGACAAATCTGCAAAAGTATGGGATATTGTTGAGGATGGTAGTAGTGGAACTGTAAATAAGACTTTGACATGTACTGAATCTGGCGGGGTGGAGGACATGCTTGTTGGTCGTCTTTGGCAGAATGATTATCTGCTTACTATCTGTCTCGGTGGCACGACCTATTTATATTCTGCCAAGGATTTAGATAAAAGCCCATTGTCATTATCTGGTCACATGAAAAATATCACTGTTTTGACTATGCTCAACAGAAGTGAAAAGATGCTTTTGTCCAGCAGCTATGATGGAGTGGTCATTAGATGGATTCCTGGCATGGGATATATAGTGCTTAATAACATGTTGTTTAACACTGCACGTATTAACTGCCTAGCTTGGTCACCTGATAGCACACTCATAGCCACTGGTTCCCTTGATACATGTGTCATTATATATGAAGTTGGAAAGCCAGCATCAAGCCGCAGAACCATAAAGGGTGCTCATATAGGTGGAGTATACGGCTTGGTTTTCATTGATCAGGAAAGAGTGGTCAGTTCGGGAGAGGATGGTTGTGTTCGTGTTTGGAATTTGATTTCTGAATAA 1311 0.4432 MSFLHGLLKKLLFDMILLTIKSKSQFDNGDILISGDAKTNNILYCTGRSVIIRNLDNPLQVWVYCEHAYPVTVARYSPNGEWIAYADVSGTVRIWGTHIEFFLKNEIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSHRVLSCAFKTTRPFRIVTCGEDFLANFYDGPPFKFNMSIRDHTNFVNCVRFSPDGSKFITVSSGRKGTIYDGKTGNKLGELSMEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWDIVEDGSSGTVNKTLTCTESGGVEDMLVGRLWQNDYLLTICLGGTTYLYSAKDLDKSPLSLSGHMKNITVLTMLNRSEKMLLSSSYDGVVIRWIPGMGYIVLNNMLFNTARINCLAWSPDSTLIATGSLDTCVIIYEVGKPASSRRTIKGAHIGGVYGLVFIDQERVVSSGEDGCVRVWNLISE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02490 436 Gene3D - 27 309 IPR015943 GO:0005515
Gma10g02490 436 SMART WD40_4 350 389 IPR001680 GO:0005515
Gma10g02490 436 SMART WD40_4 306 346 IPR001680 GO:0005515
Gma10g02490 436 SMART WD40_4 126 166 IPR001680 GO:0005515
Gma10g02490 436 SMART WD40_4 57 96 IPR001680 GO:0005515
Gma10g02490 436 SMART WD40_4 169 208 IPR001680 GO:0005515
Gma10g02490 436 SMART WD40_4 393 432 IPR001680 GO:0005515
Gma10g02490 436 SMART WD40_4 211 253 IPR001680 GO:0005515
Gma10g02490 436 ProSitePatterns Trp-Asp (WD) repeats signature. 419 433 IPR019775 -
Gma10g02490 436 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 6 351 - -
Gma10g02490 436 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 352 436 - -
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 254 IPR001680 GO:0005515
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 254 - -
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 436 IPR001680 GO:0005515
Gma10g02490 436 SUPERFAMILY WD40 repeat-like 55 433 IPR036322 GO:0005515
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 436 - -
Gma10g02490 436 Gene3D - 311 436 IPR015943 GO:0005515
Gma10g02490 436 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 6 351 - -
Gma10g02490 436 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 352 436 - -
Gma10g02490 436 ProSitePatterns Trp-Asp (WD) repeats signature. 240 254 IPR019775 -
Gma10g02490 436 Pfam WD domain, G-beta repeat 62 95 IPR001680 GO:0005515
Gma10g02490 436 Pfam WD domain, G-beta repeat 403 432 IPR001680 GO:0005515
Gma10g02490 436 Pfam WD domain, G-beta repeat 214 253 IPR001680 GO:0005515
Gma10g02490 436 Pfam WD domain, G-beta repeat 175 206 IPR001680 GO:0005515
Gma10g02490 436 Pfam WD domain, G-beta repeat 364 388 IPR001680 GO:0005515
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 64 95 IPR001680 GO:0005515
Gma10g02490 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02490 Gma-Chr10 52288199 52294813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02490 53 389 Eukaryotic Initiation Factors Gene Family AT2G46290 20.918 8.37e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02490 K24736 - gmx:100798693 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02490 10 52288199 52294813 Gma20g01214 20 38993650 39001873 GST