LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g02488	ATGGATTCAGTGCCTGCTGATGTGTCTAATTCACATACTATTAATGACCCGTCGAAGTCACCTCCGGCTAAAGAGACTGACAGACAAGCTTCTGCTTCTGTAGCCTCCGGGCAAGATAATTCTCCACATGAGGCATCACCTAGGCTATCTCCCACGGGCATATCATCCTGGGCCAAAAACTTGAAAATTTCTCAGCCATTTTCTGGCTCCCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTGCACGCATCACAAGTAATTTCGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGAAGATGACAGTTCCAGTGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTCGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGGCATGTTGTTTCACAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGCGACATGAGCTCTGGGTTTTTCGGCTATGTTGAAGGATTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACTGGGTTGATGATTTCTAGTCTTCTAGTGTTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTATAACCGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTGGTGCACCAAAGAAGGGAGTGATGGTCTTTGCCTTGCCAGGAGAGCCTGGTCTTACAGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGACCGCCAAGGAGATTTTTACTGTTGGTTAAACACAAATATGACAGAAAATAGGAAAGTATTGAACACTGGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCGCCGGGATTTATGGTTGAGGTTGTGCTCGTGGACTATAATGGCAATGTTGTAACTTCTAAAATTGAAACTACTACAAAAAAATCAGATGAGAGTTCAAGTAACAATCCTGCCAGTCCCACCCCAGTGGAAAGGAGCACCCCTGCACAGAATGCAGACAAAGAATCAGATAGTCATGATAAAGATGATGTGTTTTCAGATGGTGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTCAAGCAGTTGAAAAAGTTAAAAATGACACCAGAGTCTCCGAATCAAGCAGAGTTTCAAATGAAATTGCAAATTTATCACATGCAACAGAACAAGTTTCCTTGGGAAACAAGAGCTCTACGCCAATTCGTCATGCTAGTGAGCCAAGAACTAACGTTGAAGGAAAAACAGTGTCCAGTCTCGAGGTGCCCAGCACAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA	1869	0.4238	MDSVPADVSNSHTINDPSKSPPAKETDRQASASVASGQDNSPHEASPRLSPTGISSWAKNLKISQPFSGSQDDSSSGNVGKSTFARITSNFGLRLSPKSPVEDDSSSETAGQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLVFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLPEDFWFGAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTNMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLVDYNGNVVTSKIETTTKKSDESSSNNPASPTPVERSTPAQNADKESDSHDKDDVFSDGEAEQSASSRSKQTKAPSQAVEKVKNDTRVSESSRVSNEIANLSHATEQVSLGNKSSTPIRHASEPRTNVEGKTVSSLEVPSTESEFKAMAADASVFTFGDDEDYESD	622

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma10g02488	622	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	240	300	IPR000387	GO:0016311\|GO:0016791
Gma10g02488	622	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	160	328	IPR029021	-
Gma10g02488	622	MobiDBLite	consensus disorder prediction	1	57	-	-
Gma10g02488	622	MobiDBLite	consensus disorder prediction	497	515	-	-
Gma10g02488	622	MobiDBLite	consensus disorder prediction	471	589	-	-
Gma10g02488	622	MobiDBLite	consensus disorder prediction	547	589	-	-
Gma10g02488	622	MobiDBLite	consensus disorder prediction	471	496	-	-
Gma10g02488	622	ProSiteProfiles	C2 tensin-type domain profile.	333	460	IPR014020	-
Gma10g02488	622	SMART	PTEN_C2_2	331	459	IPR014020	-
Gma10g02488	622	ProSiteProfiles	Phosphatase tensin-type domain profile.	147	326	IPR029023	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g02488	Gma-Chr10	52267111	52276757	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma10g02488	36	622	Protein tyrosine phosphatase (PTP) family	AT3G19420	68.491	0.0	850

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g02488	K01110		-	gmx:100784003	1247.65

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma10g02488	10	52267111	52276757	Gma20g01216	20	39010040	39016288	GST
Gma01g01924	01	54763914	54771491	Gma10g02488	10	52267111	52276757	PCT
Gma11g00481	11	4023319	4030308	Gma10g02488	10	52267111	52276757	PCT

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