Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02457 ATGGCTAGTCCAACTGGAGAATTGACAAGCCATAACGACGGTACCACCGACCGGATGGGAACTGAACAATGTGAATTGTCAGAAAAAACGCCTCAGATAGGCTCTGAAGGTTTAGAGAATGAACAAAAGGAGCTTGGTACTGAGTTAACCAGTTCGGTTATTGAAGAAAAATCAAATCAAGTTTCTGCCATTGTAACAGAGAATGCCGTTATTCAACTGCCTGAACCGCTTCAACATGACTTACAAAAGAATTGCCAGACTGTAGAAGGTTCATGCCTTGAACAAAGTACTGTCGAACAAGTCACTGTTGATTTATCTAATGATAAACCTGAAAACAAATGCAAACCATTGTCTGAAAATGTTCAAAGTGAACCCGTAGAATCCATTCCTGCCGTTGTTGTTGAAGGCCAAATGCAATCCAATCCATCTCAAGCGAATATGAGTTCTGTGAATGAATTATTGGATCAACCTTCTGGAGATGCTGTGAACAATATTAGTTCCAATTGTTCAGAAAAAATGTCTAATAGCCCAACTCATTCACAGTCTAGGCGCAAGGGTAAAAAGAACTCTAAATTATTGAAAAAGTATATGCTAAGGTCGTTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGAACAAAAGAAAAACCCAAGGAACCTGAACCAACTAGTAATTTGGTTGATGGTAACAATAATGGAGTTAAGAGGAAAAGTGGGAGGAAGAAGAAAAAGAGAAAAGAGGAGGGAATTACTGATCAGTTTTCTAGAATCAGATCTCACTTAAGATATTTATTAAACCGAATAAGCTATGAAAACAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGTATCGAAAAGTTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCGGAAATTCTTCGACGCAAATTGAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCCGAAGGAAAGTTTCCAGAATCTTTGTTTGATTCTGCAGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTTTGTGATGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCGATGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTCGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGAGTCTTTCCTGAAGCAGCATCATTTGCTGGAAATAATATGGATAACAACTCGGGAGTTCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTCCAGATGATGTGAAAGTTGAAGGGGATGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTGGTTCACATGAGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCTGATGCTCCAGATGTTGAATGTAAAGTCAATGAAGAAAGTTCAAGCTCTGATTTCACTTCTGACTCCGAGGATCTTGCTGCTGCAATTGAGGATAACACATCCCCTGGACAGGATGGAGGCATCAGTTCCAGCAAAAAAAAGGGTAAAGTTGGTAAGAAGCTATCTCTGCCCGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGCCAAGAGGCTCCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAAGCTGTATGAGGAGACGTATCACAGTGATACGAGTGATGATGAAGATTGGAATGACACTGCTGCTCCAAGTGGAAAAAAGAAACTCACTGGCAATGTAACTCCAGTGTCACCAAATGGAAATGCTTCAAATAATTCTATACATACTCCTAAGAGGAATGCTCATCAGAATAATGTTGAAAATACAAATAATTCACCCACTAAATCACTTGAGGGCTGTTCGAAATCTGGTTCCAGGGATAAAAAGTCTGGATCTTCAGCACACAAAAGACTAGGAGAAGCCGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAAATGGAAACCAATTCAGGTATAAATGCTTCACAGCAAGTTACTGATGGCAGAGCTGAAAATGAGGGGGAGAAGGAATGTGAATTAATATCTCTGGAGTTCAGTGGAGAAAAATCAAAAACCCCAAACTCTAGAAAAAGGAAGCATTTGTCAGAACCCCTATCTGAAGCACAGCTGGATATCAATGGCTCAGCAGCAAGTTCACCAAATGTTCATCTAACGCAAATAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2463 0.4052 MASPTGELTSHNDGTTDRMGTEQCELSEKTPQIGSEGLENEQKELGTELTSSVIEEKSNQVSAIVTENAVIQLPEPLQHDLQKNCQTVEGSCLEQSTVEQVTVDLSNDKPENKCKPLSENVQSEPVESIPAVVVEGQMQSNPSQANMSSVNELLDQPSGDAVNNISSNCSEKMSNSPTHSQSRRKGKKNSKLLKKYMLRSLGSSDRALRSRTKEKPKEPEPTSNLVDGNNNGVKRKSGRKKKKRKEEGITDQFSRIRSHLRYLLNRISYENSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFQNLDSLCAEGKFPESLFDSAGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPMLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLSISDTWERVFPEAASFAGNNMDNNSGVPSDDSDDDDYNPNGPDDVKVEGDESSSDESEYASASEKLEGGSHEDQYLGLPSEDSDDGDYDPDAPDVECKVNEESSSSDFTSDSEDLAAAIEDNTSPGQDGGISSSKKKGKVGKKLSLPDELSSLLEPDSGQEAPTPVSGKRHVERLDYKKLYEETYHSDTSDDEDWNDTAAPSGKKKLTGNVTPVSPNGNASNNSIHTPKRNAHQNNVENTNNSPTKSLEGCSKSGSRDKKSGSSAHKRLGEAVVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFGNTRWSFRHSSQMETNSGINASQQVTDGRAENEGEKECELISLEFSGEKSKTPNSRKRKHLSEPLSEAQLDINGSAASSPNVHLTQIGNKMKTRKRK 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02457 820 SUPERFAMILY Homeodomain-like 676 736 IPR009057 -
Gma10g02457 820 Gene3D - 675 744 - -
Gma10g02457 820 SMART HOX_1 675 737 IPR001356 GO:0003677
Gma10g02457 820 MobiDBLite consensus disorder prediction 1 37 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 1 48 - -
Gma10g02457 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 400 IPR013083 -
Gma10g02457 820 MobiDBLite consensus disorder prediction 580 613 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 752 767 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 736 751 - -
Gma10g02457 820 CDD homeodomain 687 734 IPR001356 GO:0003677
Gma10g02457 820 MobiDBLite consensus disorder prediction 458 685 - -
Gma10g02457 820 ProSiteProfiles 'Homeobox' domain profile. 673 733 IPR001356 GO:0003677
Gma10g02457 820 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 130 783 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 736 820 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 791 811 - -
Gma10g02457 820 ProSiteProfiles Zinc finger PHD-type profile. 341 398 IPR019787 -
Gma10g02457 820 MobiDBLite consensus disorder prediction 137 250 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 616 664 - -
Gma10g02457 820 SMART PHD_3 343 396 IPR001965 -
Gma10g02457 820 SUPERFAMILY FYVE/PHD zinc finger 333 401 IPR011011 -
Gma10g02457 820 MobiDBLite consensus disorder prediction 430 449 - -
Gma10g02457 820 Pfam PHD-finger 343 398 IPR019787 -
Gma10g02457 820 CDD PHD_PRHA_like 343 395 IPR045876 -
Gma10g02457 820 MobiDBLite consensus disorder prediction 206 221 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 665 685 - -
Gma10g02457 820 MobiDBLite consensus disorder prediction 137 180 - -
Gma10g02457 820 PANTHER HOMEOBOX PROTEIN HAT3.1 130 783 - -
Gma10g02457 820 Pfam Homeodomain 685 729 IPR001356 GO:0003677
Gma10g02457 820 ProSitePatterns Zinc finger PHD-type signature. 344 395 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02457 Gma-Chr10 52058987 52066828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02457 238 730 Homeobox Transcription Factor Family AT3G19510 49.341 5.03e-132 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gma10g02457 PHD 2.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02457 - - gmx:100306715 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02457 10 52058987 52066828 Gma20g01252 20 39293370 39301230 GST