Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02421 ATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCTTGTGCCAAAACTGTGTATCTTGTTGATAAGTTAACTGCAGATAGCCGTGTCTATCATAAGGCTTGCTTCCGATGCCACCATTGCCGTAATACCCTTAAGCTTAGCAACTACTGTTCTTTTGAGGGGGTGCTCTACTGCAGACCTCACTATGATCAACTCTACAAGCGAACTGGTAGCCTGGACAAAAGTTTTGAAGGAATACCCAAAATTCAGAAACCAGAGAAACCGGTCACTGGTAATGAGCAGAATACTAAGGTCCTCGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGTGTGTTGCAACAAGACAGTGTATCCCACTGAGAGGGTTACGGTTAATGGGACACCCTACCACAAGGGCTGCTTCAAGTGTACCTATGGAGGTTGTACTGTAAGCTCATCAAACTTTATCACACACGAGGGAAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTCGAGAATGAATGCTAG 543 0.4494 MASFGGTTQKCMACAKTVYLVDKLTADSRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGIPKIQKPEKPVTGNEQNTKVLANVFLGTRDKCVCCNKTVYPTERVTVNGTPYHKGCFKCTYGGCTVSSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENEC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02421 180 Gene3D Cysteine Rich Protein 6 75 - -
Gma10g02421 180 Gene3D Cysteine Rich Protein 106 175 - -
Gma10g02421 180 Coils Coil 173 180 - -
Gma10g02421 180 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Gma10g02421 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Gma10g02421 180 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 179 - -
Gma10g02421 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Gma10g02421 180 Pfam LIM domain 11 65 IPR001781 -
Gma10g02421 180 Pfam LIM domain 111 166 IPR001781 -
Gma10g02421 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Gma10g02421 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Gma10g02421 180 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Gma10g02421 180 PANTHER OS06G0237300 PROTEIN 1 179 IPR045268 GO:0051015
Gma10g02421 180 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Gma10g02421 180 SMART lim_4 110 162 IPR001781 -
Gma10g02421 180 SMART lim_4 10 62 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02421 Gma-Chr10 51803491 51805165 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma10g02421 LIM 1.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02421 K09377 - gmx:100306027 385.956