LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g02396	ATGGTCACTCAAAGAGCATCATTTTACCTTTGTCTCCTTGTTATTCTGATAACTCAAGCTACTGCGGAGCCAGACGACCAATACCCAGTCTGCCTCAGTCGTGGAGGAGACTATGCCCCTAATAGCACCTATCACACCAACCTCAATACTGTTCTTTCAAGGCTCACTTCCAACACGCAAATCGACTATGGCTTCTACAATTCCTCCTACGGCCAAGACTCTGATAGAGTCTACGCAACAGGCCTTTGCAGAGGAGATGTTTCCCGACATACTTGCCTTACTTGCCTCAACAATTCTAGCTTTTTTCTCCTAAAGAACTGTCCACATCAGAAGGAGGCTGTGGGATTTGGAGGATATGATAAATGCATTTTACACTATGCAGATCAGTCAATGTTCAGTTACCAAGATTCTTCTTTCCGGTTCTATTTTTGGGAGGAAACTAATGTAACGAATTGGGATCAGTACAGTTATGTGCTCAATCAGTTGCTGTCAAGACTAAGAGTGAAAGCTGCAACATCTAACTCCAATCTCAACCGTAAATTTGCTGCTGGAAATGCAACAGTTCCGACTCCGAGTTCCCAAACTATATATGCTGTTGTTCAGTGCTATCCTGATCTGACAGCCGCAGAATGCAACGACTGCTTAATTGGCGCTTTCTCAGAAATACCCAAAAATTGTAATAACAGGTCAGGTTGTGGAGTTACTATATTAAGCTGTAACTTTAGATATGAGAACTCCAGCTTCTATGAGCCTACGCCTGATACGATAACACTACAATTTTCACCACAAGGATCTCCATCTCCTACACCATCCATCACTTCAAATTCCTCAGAGAGTACTTATCATGGAAAAAGCAGCAAATCTCAAGCTGTCAACGCCAAATACGTTGTCGCACCTATTCTATTCTTTGTTGGGTTGCTGATCTTGATTTGCATCTATTTAAGAGTAAGGAAGCCAACAAAGCATTTTGAGAGTGAAACCATGGTTGATGACGAAATTAAACTAGTCGTGTCATCACAGTTTGACTTTGACACCATAAGAGTCGCTACGAACAACTTCTCTGATGCAAACAAGCTTGGACAAGGTGGATTTGGACCTGTTTACAAGgggacactcttcaataaacaagaagtagcaatcaaaaggttatctagcaactcttgccaaggaaatattgaattcaagaatgaagtgatactaatgtccaggcttcagcaccgaaatttagttaggctccttggtttttgttatgaaagcgaagaacggctccttgtctatgagtttcttcccaataaaagtcttgacaagatcatatttgATCCCATCGAGCGTgcacatttggattggaaaaaacgccacaaaataattgaaggcattgcacttggccttctttatcttcatgaggattctcagcaaaggattattcatcgtgatctcaaattgagtaatattcttttagatgccgatatgaatcctaagatttcagattttggctttgcaaggctgtttaatgcggatcaaactctgcttaatgcaagtaaaattgcaggaacttatggatacatggcacctgagtatgcaaggcatggaaaactctcaacgaagttagatgtctttagtttcggtgtagtaatactagagattgtaagtggcaaaaagaatagtggatttcgtattggagagagtgtggagcatttattaagctttgcttggaaaaactggacgaaagggacagcagataaaattatagatcctgccttaaataatgctttgagagatgaaatactgagatgcattcacattgggctactttgtgttcaagaaaaggttgctgatagaccaacaatggcttcagttatacttatgcttgatagccactcttttgctctaccagttccattgcaaccggcctattttatgaaaaatagttgtttatcagtcatccagttttcggggtgcagttccgtggaaacaggatcaaatgaacagaaaagtgactctgctgatgtatcagcaaatgaggcctcaattagtagtctatatcctcgttag	2052	0.2315	MVTQRASFYLCLLVILITQATAEPDDQYPVCLSRGGDYAPNSTYHTNLNTVLSRLTSNTQIDYGFYNSSYGQDSDRVYATGLCRGDVSRHTCLTCLNNSSFFLLKNCPHQKEAVGFGGYDKCILHYADQSMFSYQDSSFRFYFWEETNVTNWDQYSYVLNQLLSRLRVKAATSNSNLNRKFAAGNATVPTPSSQTIYAVVQCYPDLTAAECNDCLIGAFSEIPKNCNNRSGCGVTILSCNFRYENSSFYEPTPDTITLQFSPQGSPSPTPSITSNSSESTYHGKSSKSQAVNAKYVVAPILFFVGLLILICIYLRVRKPTKHFESETMVDDEIKLVVSSQFDFDTIRVATNNFSDANKLGQGGFGPVYKGTLFNKQEVAIKRLSSNSCQGNIEFKNEVILMSRLQHRNLVRLLGFCYESEERLLVYEFLPNKSLDKIIFDPIERAHLDWKKRHKIIEGIALGLLYLHEDSQQRIIHRDLKLSNILLDADMNPKISDFGFARLFNADQTLLNASKIAGTYGYMAPEYARHGKLSTKLDVFSFGVVILEIVSGKKNSGFRIGESVEHLLSFAWKNWTKGTADKIIDPALNNALRDEILRCIHIGLLCVQEKVADRPTMASVILMLDSHSFALPVPLQPAYFMKNSCLSVIQFSGCSSVETGSNEQKSDSADVSANEASISSLYPR	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g02396	683	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	4	663	-	-
	Gma10g02396	683	SUPERFAMILY	Protein kinase-like (PK-like)	340	648	IPR011009	-
	Gma10g02396	683	Gene3D	Transferase(Phosphotransferase) domain 1	429	629	-	-
	Gma10g02396	683	ProSiteProfiles	Gnk2-homologous domain profile.	26	131	IPR002902	-
	Gma10g02396	683	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	474	486	IPR008271	GO:0004672\|GO:0006468
	Gma10g02396	683	Gene3D	-	136	248	IPR038408	-
	Gma10g02396	683	Gene3D	-	28	131	IPR038408	-
	Gma10g02396	683	Pfam	Salt stress response/antifungal	31	128	IPR002902	-
	Gma10g02396	683	Pfam	Salt stress response/antifungal	148	245	IPR002902	-
	Gma10g02396	683	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	4	663	-	-
	Gma10g02396	683	Gene3D	Phosphorylase Kinase; domain 1	315	428	-	-
	Gma10g02396	683	MobiDBLite	consensus disorder prediction	659	683	-	-
	Gma10g02396	683	ProSiteProfiles	Gnk2-homologous domain profile.	137	248	IPR002902	-
	Gma10g02396	683	Pfam	Protein kinase domain	354	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma10g02396	683	ProSiteProfiles	Protein kinase domain profile.	353	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma10g02396	683	MobiDBLite	consensus disorder prediction	259	283	-	-
	Gma10g02396	683	CDD	STKc_IRAK	359	624	-	-
	Gma10g02396	683	SMART	serkin_6	353	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g02396	Gma-Chr10	51573347	51576575	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma10g02396	8	683	Receptor kinase-like Gene Family	AT4G21410	44.508	0.0	549

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gma10g02396		Pkinase	1.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g02396	-		-	gmx:100790532	1353.58