Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02384 atgcagatcttcgtcaagaccctcaccggaaagaccatcacccttgaggtggaaagctctgacaccatcgacaacgtcaaggccaagatccaggacaaggaaggaattcccccggatcagcaacgtctcatcttcgccggaaagcagctcgaggacggccgtaccctcgccgactacaacatccagaaggagtcaacccttcaccttgtccttcgtctccgtggtggcatgcagatcttcgtcaagactctcactggcaaaaccataaccctagaggtcgaaagctctgacaccattgacaacgtcaaggccaagatccaggacaaggagggaatccccccagaccagcaacgtctcatcttcgccggaaagcaacttgaggacgggcgcaccctcgccgactacaacatccagaaggaatcaacccttcacctcgtcctccgtctccgtggtggcatgcagatcttcgttaagaccctcaccggcaagactataaccctagaagtcgagagctccgacaccatcgacaacgtcaaggctaagatccaggacaaggagggtatccccccagaccagcagaggctgatcttcgccggcaagcagctcgaggacggacgtacccttgctgactacaacatccagaaggagtcaactctccacttggtgttgcgtcttcgtggtgTTGGAACATTAATTGGCTTGCGGAATGCACATTTAGATGATCCACACAGTTTGCCCGAGGATCATGGAATGCTGGCAGAAGTTGGGGTTGAGCAGCAGAAGTTGATAGAATTCTTCTTCAAACTCATGCTTTCTATTGAATCTTATCAACAATGTAGAGTAGCTATAACTCTCTGGAGAGTGCTTGGAGATGTCACTATGATGCTGTTTGAGGAGGGACTATCACGGATTCCGCCATCGTGA 924 0.1136 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGVGTLIGLRNAHLDDPHSLPEDHGMLAEVGVEQQKLIEFFFKLMLSIESYQQCRVAITLWRVLGDVTMMLFEEGLSRIPPS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02384 307 PANTHER - 70 227 - -
Gma10g02384 307 PANTHER - 1 155 - -
Gma10g02384 307 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gma10g02384 307 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Gma10g02384 307 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gma10g02384 307 SMART ubq_7 1 72 IPR000626 GO:0005515
Gma10g02384 307 SMART ubq_7 77 148 IPR000626 GO:0005515
Gma10g02384 307 SMART ubq_7 153 224 IPR000626 GO:0005515
Gma10g02384 307 CDD Ubl_ubiquitin 153 227 - -
Gma10g02384 307 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Gma10g02384 307 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Gma10g02384 307 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Gma10g02384 307 Gene3D - 77 152 - -
Gma10g02384 307 Gene3D - 153 232 - -
Gma10g02384 307 Gene3D - 1 76 - -
Gma10g02384 307 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Gma10g02384 307 CDD Ubl_ubiquitin 77 152 - -
Gma10g02384 307 CDD Ubl_ubiquitin 1 76 - -
Gma10g02384 307 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gma10g02384 307 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Gma10g02384 307 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Gma10g02384 307 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gma10g02384 307 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gma10g02384 307 PRINTS Ubiquitin signature 53 74 IPR019956 -
Gma10g02384 307 SUPERFAMILY Ubiquitin-like 152 227 IPR029071 -
Gma10g02384 307 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Gma10g02384 307 PANTHER UBIQUITIN 1 155 - -
Gma10g02384 307 PANTHER UBIQUITIN 70 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02384 Gma-Chr10 51448122 51451204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02384 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.79e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02384 - K08770 sind:105174326 442.195