Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02379 ATGGTCAGGGCGACCACAATACCACTACACCCAAAAATAATGCATCTCCATCATAATCCTCTTGGGGCAAAAGCATTTCCAGGTCAAGAATTCTCGGTCTCTAGTTCCCATTTTGTCATCATATTGTTGGGGCTTGTGATCTGCACCATGGCAACCACATTAAAAGGAATCTACAAGAGTTTCAAATATATCACCCAAATATTTGTTGTGAAGGAGCGGGAGATGGAAATTGGGTACCCGACAGATGTTAAGCATGTGGCTCACATTGGATGGGATGGCCCCTCAGGAACTGGACCCAGTTGGATGAATGATTTTAAAACAGCGCCTGATTTTTCAACATCACTAGGAAACTTGGGTGAACTAAGTGACCCCAATGCTATGGCTGTCACTACATCATGGTCCTCCCAAGattttgaagtgtccacaggaagccaaccaacatcaaacatttacaaaggcatcccatctgcaggggtttctcatgctcctaagaaatccaagaagaaaaagaccaaATTGAAGAGTAAGAGCGTGGCTTTTGGAACACAAGGATTTGCTGCAATGTATAACAAAAGTCAGAACACAAAATTCGATTCTCAAcaacaacagcagcagcaacaaccgcagcagcaacaaccgcagAATTTGATGGAGATGTCAACACAGAGGACATCCTCGGAAGGAAGGAACCGAGACGATCAGGAACCTGCTGCGGGAAACGAAGTCACCATGGAAGCTCCTCCTTCGGGTGACGAGGACCAAGATCCCGATGAGGGGTTCAAAAGGAGGCGCCACACCCGCCACACACTGCACCAAATTTCAGAGATGGAAGCTTTCTTCAAGGAGTGCCCTCACCCTGATGAGAAGCAAAGGAAAGCGCTTGGCCGCGAGCTCGGGTTGGTGCCTTTGCAAATCAAGTTTTGGTTTCAAAACAAGCGCACTCAAGTGAAGTCTCAACAAGAGAGATACGAAAACAACCTTCTGAGGGTTGAGAATGACAAGCTTCGAGCAGAGAACAGTAGGTACAGGAATGCACTATCGAATACTTCATGCCCTAACTGTGGAGCCCCTACTACTCTTGGAGAAATGTCCTTTGACGAGCAGCAGTTGAGGATGGAGAATGCGCGACAAAAAGAGGAGATTGATAGCATGTCAGGACTTGCAGCCAAGTATGCAGCTGGAAAATCTGCGAGCAATTCGTACTATAACATGCCATCTAATCAAAACCAGATGCCTTCGCGCTCGCTTGACCTgggagttgttaacaacaacagcagcatcaacaacaacaacagcagcatcaacaacagcaacaacaagaacaacaacaacaacaactatattgtacaagcgcaacctgtagccatggttGGGGAAATGTATGGTGGAAATGACCCTCTTAGGGAACTCCCACTTCTTTCTAGTTTTGACAAAGATTTAATTTCGGAGATTGGTCTCGTGGCAGTAGAGGAAATCAATCAGTTGACTCTGTCTGCAGATCCTTTGTGGGTCCCAGGCAATTACGGAAGTGAAGTTATAAATGAAGATGAATACCTGAGGCATTTCCCTAGGGGAATAGGTCCAACACTCTTGGGCGCAAGAACCGAATCATCTCGGCAAACCGCTATAGTAATGATGCATCATATGAAACTCGTTGAGATGCTTATGGATGTGAATCAATGGTCAAATATGTTTTGCGGCATCGTTTCAAGGGCAGTGACACACGAAGTGCTGTCAATTGGAGACCATGCAAGATACGATGGAGCCTACCAAGTGATGTCAGCTGAGTTTCAGGTTCCTTCACCCCTTGTTCCTACTCGCGACAACTATTTCATCAGGTTCAGTAAGAAGCACGCAGGACAATCATGGGCGGTGGTTGATATTTCAATGGATCATCTGCGACCTGGTGCAGTCACAAGAACCCGAAGACGACCCTCTGGTTGCATAATTCAAGAATTGCCAAATGGTTACTCAAAGGTCATATGGGTTGAACATGTCGAAGTTGACGACATCGAGGTGCATAATCTTTACAAAAATTTGGTTAACTCTACCCTTGCGTTTGGAGCTAAACGTTGGATTGCAGCAATAGAAAGAACATGCGAACATCTTGCTAGGGCAATGGCCACCAACATACCCCAAGGGGCACTTTGTGTGATAACAAGTCACGAGGGTCGGAAAAGTATGATGAAGCTGGCCGAAAGAATGGTATTGAGCTTTTCTACTGGTGTGGGTGCTTCCACTGCAAACGCTTGGACACCACTACCACTTGATCTTGAAAATGTTAGGGTCATGACCAGAAAGAGCGTGGATGATCCAGGCAGACCTTCCGGTATAGTGCTCAGTGCTGCAACTTCTCTCTGGCTCCCAGTTCCTGCAAGGAGAGTTTTTGACTTTCTCAGATCCGAAAACACTAGAAATCAGTGGGATATTCTGTCGAGCGGGGCTCAAGTGAACGAGCTTGCACATATTGCTAAAGGGAGAGACCATGGAAATTCTGTCTCTCTTCTTCGAGTGAATACTCAGAATGTGGCCCAGAACAATATGCTGATACTTCAAGAGAGTTGCATTGATGCTACAGGCTCATTTGTGGTTTATGCTCCTATTGATTTAGCTTCCATGAATCTTGTGTTGGGTGGTGGTAATCCGGATTACGTGGCCCTGCTCCCTTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGCATTGAACGTAGTGCCCGGGCCCGTATGTGAGGTTGTTGGATCTGGACGAGGTTGTCTTCTTACGGTTGCATTTCAGATACTGGTGGATTCTACACCAACGGCAAAACTCTCTGTTGGTTCAGTGACAACCGTTAACAATTTGATAAAGAGAACCGTGGAAAGGATCAAAGATTCAGTCACGCTTGACGGCGCCTAA 2895 0.4211 MVRATTIPLHPKIMHLHHNPLGAKAFPGQEFSVSSSHFVIILLGLVICTMATTLKGIYKSFKYITQIFVVKEREMEIGYPTDVKHVAHIGWDGPSGTGPSWMNDFKTAPDFSTSLGNLGELSDPNAMAVTTSWSSQDFEVSTGSQPTSNIYKGIPSAGVSHAPKKSKKKKTKLKSKSVAFGTQGFAAMYNKSQNTKFDSQQQQQQQQPQQQQPQNLMEMSTQRTSSEGRNRDDQEPAAGNEVTMEAPPSGDEDQDPDEGFKRRRHTRHTLHQISEMEAFFKECPHPDEKQRKALGRELGLVPLQIKFWFQNKRTQVKSQQERYENNLLRVENDKLRAENSRYRNALSNTSCPNCGAPTTLGEMSFDEQQLRMENARQKEEIDSMSGLAAKYAAGKSASNSYYNMPSNQNQMPSRSLDLGVVNNNSSINNNNSSINNSNNKNNNNNNYIVQAQPVAMVGEMYGGNDPLRELPLLSSFDKDLISEIGLVAVEEINQLTLSADPLWVPGNYGSEVINEDEYLRHFPRGIGPTLLGARTESSRQTAIVMMHHMKLVEMLMDVNQWSNMFCGIVSRAVTHEVLSIGDHARYDGAYQVMSAEFQVPSPLVPTRDNYFIRFSKKHAGQSWAVVDISMDHLRPGAVTRTRRRPSGCIIQELPNGYSKVIWVEHVEVDDIEVHNLYKNLVNSTLAFGAKRWIAAIERTCEHLARAMATNIPQGALCVITSHEGRKSMMKLAERMVLSFSTGVGASTANAWTPLPLDLENVRVMTRKSVDDPGRPSGIVLSAATSLWLPVPARRVFDFLRSENTRNQWDILSSGAQVNELAHIAKGRDHGNSVSLLRVNTQNVAQNNMLILQESCIDATGSFVVYAPIDLASMNLVLGGGNPDYVALLPSGFAVLPDGPALNVVPGPVCEVVGSGRGCLLTVAFQILVDSTPTAKLSVGSVTTVNNLIKRTVERIKDSVTLDGA 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02379 964 MobiDBLite consensus disorder prediction 193 224 - -
Gma10g02379 964 ProSiteProfiles 'Homeobox' domain profile. 259 319 IPR001356 GO:0003677
Gma10g02379 964 SUPERFAMILY Homeodomain-like 255 325 IPR009057 -
Gma10g02379 964 Pfam Homeodomain 262 317 IPR001356 GO:0003677
Gma10g02379 964 Pfam P21-Rho-binding domain 76 108 IPR000095 -
Gma10g02379 964 SUPERFAMILY Bet v1-like 723 956 - -
Gma10g02379 964 SUPERFAMILY Bet v1-like 537 703 - -
Gma10g02379 964 Coils Coil 313 345 - -
Gma10g02379 964 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 228 420 IPR042160 -
Gma10g02379 964 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 452 961 IPR042160 -
Gma10g02379 964 MobiDBLite consensus disorder prediction 193 260 - -
Gma10g02379 964 Pfam START domain 489 701 IPR002913 GO:0008289
Gma10g02379 964 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 228 420 - -
Gma10g02379 964 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 452 961 - -
Gma10g02379 964 CDD homeodomain 262 320 IPR001356 GO:0003677
Gma10g02379 964 Gene3D - 249 330 - -
Gma10g02379 964 SMART HOX_1 261 323 IPR001356 GO:0003677
Gma10g02379 964 MobiDBLite consensus disorder prediction 138 176 - -
Gma10g02379 964 CDD CRIB 75 108 - -
Gma10g02379 964 ProSiteProfiles CRIB domain profile. 77 90 IPR000095 -
Gma10g02379 964 MobiDBLite consensus disorder prediction 138 154 - -
Gma10g02379 964 ProSiteProfiles START domain profile. 474 705 IPR002913 GO:0008289
Gma10g02379 964 SMART START_1 483 702 IPR002913 GO:0008289
Gma10g02379 964 CDD START_ArGLABRA2_like 478 701 - -
Gma10g02379 964 Gene3D - 541 708 IPR023393 -
Gma10g02379 964 SMART PBD_5 77 108 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02379 Gma-Chr10 51400645 51424512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02379 228 964 Homeobox Transcription Factor Family AT4G21750 59.499 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma10g02379 START 3.3e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02379 K09338 - gmx:100787891 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02379 10 51400645 51424512 Gma20g01334 20 40306640 40311355 GST
Gma01g02402 01 58768928 58772133 Gma10g02379 10 51400645 51424512 PCT
Gma11g00031 11 232747 235881 Gma10g02379 10 51400645 51424512 PCT
Gma10g02379 10 51400645 51424512 Gma01g02402 01 58768928 58772133 PCT
Gma10g02379 10 51400645 51424512 Gma11g00031 11 232747 235881 PCT