Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02366 ATGGAGCTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGGAAGGGCCAGAAGCGGAAGCTCGACGAGGAGCAGCACCACGAGGACCGCCAGATCTCGCCGGCCCCTCCCACCGCCGACGAGCGCGCCGCCCTCCTCTCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACCGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGATGTGGTGAACTTGATTGTTGAAGGAGGCGCGATTCCGGCTTTGGTGAAGCATCTTCAGGCGCCGCCTCTCAGTGACCGTGTCCAGAATCCGTTGCCGTTCGAGCACGAGGTTGAGAAAGGGAGCGCTTTCACACTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGTTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTTTTGAAGAGGCACAGGAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCCGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAGGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCTGATGCAAAGGTGCAACGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTACGTTCTGAAGATGCTGGTGTTCATTATGAAGCGGTCGGTGTGATTGGTAATTTAGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAACCGGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCATTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCAACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAGCTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACCCACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCGCTGCTCAAGCTTCTTGACTCAAAAAATGGCTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGCGTCTGATTTCATAAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAAACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCTTCAGATGATCAGAGAATAATTTTTATTGATCACTATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCGGATAAAGCCTCGACCTTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTACGTAAACAATGCTACGTTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTTCTTGCATCATCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCCGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCGCTAGAGAATGTGTCAAGTATGTATGAACTTACAGAAGCCTTCAACGCAATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTTCAAGGCCAGGGCACTCTCTTCTGATTCAGCGCATAACACCAGAGATCCGTAATTACTTCGTTAAAGCTCTTACAAAGGCCAACTCTCAAAACGACCGACTCTAG 2124 0.4637 MELQRRQDQSLSQRKGQKRKLDEEQHHEDRQISPAPPTADERAALLSDVAEQVSILESTFTWNEADRSAAKRATHALADLAKNEDVVNLIVEGGAIPALVKHLQAPPLSDRVQNPLPFEHEVEKGSAFTLGLLAVKPEHQQFIVDSGALTHLVDLLKRHRNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAGVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNASDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSSDDQRIIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLADKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELTEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRITPEIRNYFVKALTKANSQNDRL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02366 707 MobiDBLite consensus disorder prediction 1 35 - -
Gma10g02366 707 CDD BTB_POZ_ARIA_plant 527 642 - -
Gma10g02366 707 Gene3D - 352 412 IPR011989 -
Gma10g02366 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 - -
Gma10g02366 707 Gene3D - 416 523 IPR011989 -
Gma10g02366 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Gma10g02366 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Gma10g02366 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Gma10g02366 707 MobiDBLite consensus disorder prediction 1 38 - -
Gma10g02366 707 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gma10g02366 707 Gene3D Potassium Channel Kv1.1; Chain A 524 666 IPR011333 -
Gma10g02366 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Gma10g02366 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 94 148 IPR000225 GO:0005515
Gma10g02366 707 SUPERFAMILY ARM repeat 61 412 IPR016024 -
Gma10g02366 707 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Gma10g02366 707 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Gma10g02366 707 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Gma10g02366 707 SMART BTB_4 540 637 IPR000210 GO:0005515
Gma10g02366 707 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Gma10g02366 707 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gma10g02366 707 SMART arm_5 468 508 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 270 310 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 353 393 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 312 352 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 136 184 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 186 226 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 83 135 IPR000225 GO:0005515
Gma10g02366 707 SMART arm_5 228 268 IPR000225 GO:0005515
Gma10g02366 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Gma10g02366 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 IPR044282 -
Gma10g02366 707 SUPERFAMILY ARM repeat 438 611 IPR016024 -
Gma10g02366 707 Gene3D - 44 351 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02366 Gma-Chr10 51282049 51291788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02366 199 507 U-box Gene Family AT3G46510 25.484 6.91e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma10g02366 BTB 7.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02366 - - gmx:100784348 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02366 10 51282049 51291788 Gma20g01345 20 40440678 40448749 GST
Gma01g02392 01 58693471 58700568 Gma10g02366 10 51282049 51291788 PCT
Gma11g00040 11 315566 323757 Gma10g02366 10 51282049 51291788 PCT
Gma10g02366 10 51282049 51291788 Gma01g02392 01 58693471 58700568 PCT
Gma10g02366 10 51282049 51291788 Gma11g00040 11 315566 323757 PCT