Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02290 ATGCCTTCACTCTCTCTCTCTGAAACTGACACCACCACCCCTAAACCTATTTCCAACAAAAAGAAACCAAAGACCCAATCCCTCACTGATCCCGACCTCGATGGGGTTTCGGGGAAGAAGACGAAGAAGCGCAAGGCTTCAGATTTATTAGAACCAGAGGCCATGCCCGCCGCTTACAGCTACAACAATGGGGACGACGAGACCAGCTCCGACCTCGTCGAACCCGAACCTGCTTCCAGAGAAGACGACAGTCAGAATAAAAAGAAAAAGAAGAAAAAGGTTGTCAAGTCCGAAGAAAAAGAACAGCCTTTGTTGGTAACGGAGCCTAAAGAAGAAAAGAAGGATGACCCCAACGCGATTTCCAACTTCAGGATTTCGGAACCATTGAGGGAGAAATTGAAGGAGAAGGGTATCGAATCGCTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTTGGCCGTGCTCGCACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCTTTAATAAATGGTCCAGCAAAATCTGCGAGAAAGACTGGCTACGGGAGGACTCCGAGTGTTCTCGTGCTTCTACCTACTAGGGAATTGGCTTGCCAGGTGCATGCTGATTTTGAAGTGTATGGTGGGGCGATGGGATTGAGTTCATGTTGTTTATACGGTGGAGCTCCATATCAAGGTCAAGAACTTAAGCTGAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGCCGTGTGAAGGATCATATTGAGAAGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCTTGTACTAGTTCTGCCAGGGCCCAACTTATCCCAGATATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTGTATTTACCGAGACAAAAGAATGTGCTTCTCAGCTTGCAGGGATCTTGAATGGAGCAAAAGCTCTCCATGGTGACATACAGCAATCAACACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATCAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGAGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGAGCAGGTAATACTGGGGTTGCTGTCATGCTTTATGATCCAAAAAGATCTAACATACCTAGAATAGAAAGAGAGTCCGGTGTAAAATTTGAACACGTATCCGCCCCTCAGCCCGATGATATTGCCAAAGCTGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGAGCTTTTGAACAGTTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTAGTCCTTGAGACTGGGAAACCAATCTATACCCAATCTTATGGCTATTCAATCTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATGGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCACAGTTGCAACAGAAAGAGCCACAATCAAGAGGTGGCAGATTTGGTGATAATGGTGGTCGTGGTGGGAACTACAGGTTTGGTGGAAGAGGTGGAGGAGGCAGGAATGGTAGGTTCTCCAATGGTGGTGGGCGTGGCGGCAACTGGGGTGGAAAGAGATGGTGA 2094 0.4503 MPSLSLSETDTTTPKPISNKKKPKTQSLTDPDLDGVSGKKTKKRKASDLLEPEAMPAAYSYNNGDDETSSDLVEPEPASREDDSQNKKKKKKKVVKSEEKEQPLLVTEPKEEKKDDPNAISNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPAKSARKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYQGQELKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVENVNKVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILNGAKALHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNIPRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEELLNSSGLPVIELLAKALAKAVGYTDVKQRSLLTSMENYVTLVLETGKPIYTQSYGYSILRRFLPEEKVEAVKGLSLTADGNGVVFDVPAKDLDIYLNGQENASNVCLEVVKTLPQLQQKEPQSRGGRFGDNGGRGGNYRFGGRGGGGRNGRFSNGGGRGGNWGGKRW 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02290 697 MobiDBLite consensus disorder prediction 95 120 - -
Gma10g02290 697 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 681 - -
Gma10g02290 697 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Gma10g02290 697 Gene3D - 65 331 IPR027417 -
Gma10g02290 697 Pfam Helicase conserved C-terminal domain 364 463 IPR001650 -
Gma10g02290 697 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 58 681 - -
Gma10g02290 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 475 IPR027417 -
Gma10g02290 697 SUPERFAMILY RNA-binding domain, RBD 556 639 IPR035979 GO:0003676
Gma10g02290 697 CDD GUCT_RH7_like 559 644 - -
Gma10g02290 697 Pfam GUCT (NUC152) domain 552 647 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gma10g02290 697 Gene3D - 343 567 IPR027417 -
Gma10g02290 697 MobiDBLite consensus disorder prediction 73 88 - -
Gma10g02290 697 SMART ultradead3 137 349 IPR014001 -
Gma10g02290 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 502 IPR001650 -
Gma10g02290 697 Pfam DEAD/DEAH box helicase 142 319 IPR011545 GO:0003676|GO:0005524
Gma10g02290 697 Gene3D - 568 642 - -
Gma10g02290 697 MobiDBLite consensus disorder prediction 1 24 - -
Gma10g02290 697 MobiDBLite consensus disorder prediction 646 697 - -
Gma10g02290 697 SMART helicmild6 386 463 IPR001650 -
Gma10g02290 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 331 IPR014001 -
Gma10g02290 697 MobiDBLite consensus disorder prediction 35 50 - -
Gma10g02290 697 MobiDBLite consensus disorder prediction 1 123 - -
Gma10g02290 697 CDD DEADc 129 326 - -
Gma10g02290 697 CDD SF2_C_DEAD 346 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02290 Gma-Chr10 50494443 50499264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02290 155 469 Eukaryotic Initiation Factors Gene Family AT1G72730 31.348 2.99e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02290 K16911 - gmx:100805921 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02290 10 50494443 50499264 Gma10g02290 10 50494443 50499264 ECH