Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02285 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTAATCCATTTTTCTAATGGTCTCTACCCGCAGCACAAAATCTCCCAAGATCTCATTCGGGACGATCAAAATATCGATCAATCTCCCCATGTCGGCTATTCTGATAAAAAATGGCGTACAAGCCGCCCAAAAAAACTATTTTATCATGAGGCTGCAGCTACCAGCCACGCTAATTCTTCTAACCAAGAATATGCTAAAAAGATGGTTCATAGAGAGATTGAAAGGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCGCTTCATCAAGGGAAAGCGTTCCATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAGTTGAGTGACAAGAGGGATAAGCTGAAGAAGAAACCCTCCATAAATTCCACCCCTGAAGGCCATGAGAATTGCAAGCATGTATCTAGTGGTTTCACTATCCATCAGAATAGTGGTGGAGCTGTGGGGATTGAAATTAGTGGATTCAGTGAGGAAGAGGTTCCACTTTCAAAATTACTTAAACTAGTGTTAGAAGAGAGACTTGAAGTTGTTAGTTGTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGGTTGACAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCAATGTAATTCCATCACTTAGATGTTCTGAGTAA 747 0.411 MFPLQRGNELVIHFSNGLYPQHKISQDLIRDDQNIDQSPHVGYSDKKWRTSRPKKLFYHEAAATSHANSSNQEYAKKMVHREIERQRRQEMATLHASLRSLLPLRFIKGKRSISDQMNEAVNYINHLQKNIKELSDKRDKLKKKPSINSTPEGHENCKHVSSGFTIHQNSGGAVGIEISGFSEEEVPLSKLLKLVLEERLEVVSCLSTKVNGRLLHSLQCEVDNSDSVDLSELRRKFSNVIPSLRCSE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02285 248 Gene3D - 66 152 IPR036638 GO:0046983
Gma10g02285 248 Coils Coil 117 144 - -
Gma10g02285 248 CDD bHLH_AtORG2_like 76 152 - -
Gma10g02285 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
Gma10g02285 248 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 246 - -
Gma10g02285 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 246 IPR015660 GO:0003700|GO:0006357
Gma10g02285 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Gma10g02285 248 Pfam Helix-loop-helix DNA-binding domain 76 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02285 Gma-Chr10 50457781 50459564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02285 64 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.860 6.53e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g02285 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02285 - - gmx:100804315 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02285 10 50457781 50459564 Gma10g02285 10 50457781 50459564 ECH
Gma10g02285 10 50457781 50459564 Gma20g01430 20 41420525 41422065 GST
Gma16g01647 16 37460537 37461667 Gma10g02285 10 50457781 50459564 PCT
Gma09g01439 09 38734399 38736309 Gma10g02285 10 50457781 50459564 PCT
Gma10g02285 10 50457781 50459564 Gma16g01647 16 37460537 37461667 PCT
Gma10g02285 10 50457781 50459564 Gma09g01439 09 38734399 38736309 PCT