Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02284 ATGAATCCTTTACACCCCACTGATGAGTTGTACTTTCAGATAGCACCAGATAATAATTATTATTCCCTACCAATCCAAACTACCCCAGAAAATCAGATCTTGCATGATCCTGTGATGGATGGAAGCGCCCTAATCCATTTTACGAGTCAAATGGGAACCAAGGGCAAGCAAAGAGAAGATTTTAAGACTACAACCATAGATGAAAACAAGAAGTGGATGCATAGAGAGACTGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACCAACTTTAGATCTCTCCTTCCTCTTGAATACATCAAGGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACAAATTACATCAAGTACCTTCAGAATAAGGTAAAACAGTTGCAAGCCACGAGGGACAAACTTATGAAGTTGTCCAATTTGAGTCCCGTTGGTTCTGAGAGTGGAAGCTTGAGTACTACCCATCTTCCAGTATGCGTCATTGTTCATCCTTGTCCAGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCGGGAAATATGCCTGTCCTTTGTCAAGAGTGCTAGACATAGTGCTTAAGGAAGGGCTTGATGTGGTAAACTGTACTTCCACCAAACCAGATGATAGGTTCATACACACTATCCGATGTGAGGTTCCGCATATGATGACTGGGAATAATTACACTGAACTGCAAAGAAAGTTTGTTGAAGCAATATCATCTTCAAGTTTGGAGGAGAGACTGTCTGCACCTGAAAACTGCTGA 762 0.4147 MNPLHPTDELYFQIAPDNNYYSLPIQTTPENQILHDPVMDGSALIHFTSQMGTKGKQREDFKTTTIDENKKWMHRETEKQRRQEMTRLCTNFRSLLPLEYIKGKRSISDHMHEGTNYIKYLQNKVKQLQATRDKLMKLSNLSPVGSESGSLSTTHLPVCVIVHPCPGGVQIKCSYSFGKYACPLSRVLDIVLKEGLDVVNCTSTKPDDRFIHTIRCEVPHMMTGNNYTELQRKFVEAISSSSLEERLSAPENC 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02284 253 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 35 246 IPR015660 GO:0003700|GO:0006357
Gma10g02284 253 Gene3D - 61 143 IPR036638 GO:0046983
Gma10g02284 253 PANTHER TRANSCRIPTION FACTOR 35 246 - -
Gma10g02284 253 Pfam Helix-loop-helix DNA-binding domain 71 122 IPR011598 GO:0046983
Gma10g02284 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Gma10g02284 253 Coils Coil 118 141 - -
Gma10g02284 253 CDD bHLH_AtORG2_like 70 142 - -
Gma10g02284 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 137 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02284 Gma-Chr10 50440229 50441741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02284 67 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.197 4.08e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g02284 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02284 - - gmx:100803786 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02284 10 50440229 50441741 Gma10g02284 10 50440229 50441741 ECH
Gma10g02284 10 50440229 50441741 Gma20g01431 20 41428053 41428616 GST
Gma16g01646 16 37443602 37444974 Gma10g02284 10 50440229 50441741 PCT
Gma09g01438 09 38702737 38704494 Gma10g02284 10 50440229 50441741 PCT
Gma10g02284 10 50440229 50441741 Gma16g01646 16 37443602 37444974 PCT
Gma10g02284 10 50440229 50441741 Gma09g01438 09 38702737 38704494 PCT