Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02280 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCTTTCGAGCTATCTGTTCTATGCGATGCTGAAATCGCTCTCGTCATCTTCTCCAGCCGTGGCAAGCTTTTTCAGTATAGTAGCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGATGTAGCTGAACATCAATCGGAGCAGTGCTTATACCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAGTCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTGACACAGAAGCTGGTATCACGAATTGACGAATTACATGGAAAGGTGCATAGCCTGGAGCAGGCTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATGTACCCAGATTTGTGAAGGTTCTCCTAATGGCCATATTTTGCAAGATAAACAAGTCAATCAGTTTGAATATGGAACAGCAGGTTCGTTTCGGCTTCAGCAAGAGCAAACTACTGCTTCCAAAGGAAAAGAAATAGAGACGATCGAGGACTGGTTGAGGCCAAAGCAGTCATAA 699 0.4392 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSSTDINRIIEKYRQCCFNMSQTGDVAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQERGKCTQICEGSPNGHILQDKQVNQFEYGTAGSFRLQQEQTTASKGKEIETIEDWLRPKQS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02280 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gma10g02280 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 Coils Coil 151 171 - -
Gma10g02280 232 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Gma10g02280 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma10g02280 232 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 228 - -
Gma10g02280 232 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma10g02280 232 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma10g02280 232 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gma10g02280 232 PANTHER MADS BOX PROTEIN 1 228 - -
Gma10g02280 232 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02280 Gma-Chr10 50381735 50386248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02280 1 180 MADS-box Gene Family AT3G02310 50.276 3.55e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma10g02280 K-box 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02280 K09264 - gmx:100802197 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02280 10 50381735 50386248 Gma16g01640 16 37336189 37343500 PCT
Gma10g02280 10 50381735 50386248 Gma09g01428 09 38483862 38493811 PCT