Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02254 ATGCAAAATTCATCTTCCTTCTCCTACTCAACTCAAAGGAAAATGGAGGGCCCCAGTGAGATAGGTCTCATTGGAGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTTGAAGGCGCATCTGGTGATGATCAGGATGGTGGTGATGATCAGCCACAGAGGAAGAAGAGATACCACAGACACACCCCTCACCAAATTCAAGAGCTTGAGGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTAAGTAAGAGGCTTGCTTTGGAGAATAAGCAAGTCAAGTTTTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAGTTTGATGAAGGACGCCATGTCAAATCCAGTGTGTAACAACTGTGGTGGCCCTGCTATTCCTGGCCAAATTTCATTTGAAGAGCATCAGATTAGAATTGAGAATGCTAGACTAAAGGATGAATTGAACCGTATATGCGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCATTGACCAATCCCATGGCTCTCCCAACCTCAAATTCTGGTCTTGAACTTGGTATTGGAAGGAATGGGATTGGTGGTTCAAGCACCCTTGGCACTCCCTTGCCTATGGGGCTTGATTTGGGAGATGGAGTGTTGGGCACTCAACCTGCAATGCCTGGGATTAGACCAGCATTGGGATTGATGGGAAATGAAGTTCAGCTTGAGAGATCTATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTGCTGAAGATGACTCAGGCAGAGAGCCCACTTTGGATCAAGAGTTTGGATGGTGAGAAGGAAATGTTTAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGCTATATAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCCTCTATGATTGCTAGAGCTATCAACCTCGATGTTATATCTAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTTCAATTGCTTTCGCCACTAGTTCCTGTCCGTCAAGTAAGATTCATCCGATTCTGTAAGCAGCATGCAGAAGGTGTTTGGGCTGTGGTTGATGTTTCTATTGAGATTGGTCATGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAACACTGGGAGTATGATGAGAATGTTGTACACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCTACCCTCCAAAGGCAATGTGAATGCTTGGCTATCCTCATGTCCTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTAGGAGAAGCATGTTGAAATTGGCACAACGCATGACTAGTAACTTCTGTTCCGGGGTTTGTGCTTCGTCGGCTCGGAAGTGGGACAGCCTTCACATAGGGACTCTTGGTGATGACATGAAAGTGATGACTAGGAAAAACGTGGATGACCCTGGTGAGCCTCCTGGGATTGTACTCAGTGCTGCCACTTCTGTTTGGGTGCCAGTGTCACGGCAAAGGCTGTTCGACTTTCTACGTGATGAACGCTTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAATGCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATGGACGCGTCGTGCTCAGTGGTGGTATATGCACCAGTTGACGTGCAATCACTGAACGTGGTGATGAGTGGTGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTTGCAATTCTCCCCGATGGCCACTGCAACGACAACGGCTGCAACGGGACTTTACAGAAGGGTGGCGGTGGCAATGACGGCGGCGGAAGCCTTCTCACAGTCGGGTTCCAAATACTGGTGAACAGTCTCCCAACAGCAAAGCTCACAGTGGAGTCAGTGGACACTGTGAACAACCTCATCTCCTGCACCATTCAGAAGATCAAAGCTTCTCTCAGAGTTGCATGA 2298 0.4704 MQNSSSFSYSTQRKMEGPSEIGLIGENFDAGLMGRMRDDEYESRSGSDNFEGASGDDQDGGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSKRLALENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKDAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTNPMALPTSNSGLELGIGRNGIGGSSTLGTPLPMGLDLGDGVLGTQPAMPGIRPALGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEMFNHEEYARLFSPCIGPKPTGYITEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIEIGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDENVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWVPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCNDNGCNGTLQKGGGGNDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKASLRVA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02254 765 CDD homeodomain 67 125 IPR001356 GO:0003677
Gma10g02254 765 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Gma10g02254 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 763 IPR042160 -
Gma10g02254 765 MobiDBLite consensus disorder prediction 1 15 - -
Gma10g02254 765 SUPERFAMILY Homeodomain-like 54 125 IPR009057 -
Gma10g02254 765 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Gma10g02254 765 MobiDBLite consensus disorder prediction 1 75 - -
Gma10g02254 765 MobiDBLite consensus disorder prediction 32 46 - -
Gma10g02254 765 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Gma10g02254 765 Coils Coil 119 146 - -
Gma10g02254 765 Pfam START domain 278 501 IPR002913 GO:0008289
Gma10g02254 765 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 763 - -
Gma10g02254 765 SUPERFAMILY Bet v1-like 270 501 - -
Gma10g02254 765 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Gma10g02254 765 SMART START_1 277 501 IPR002913 GO:0008289
Gma10g02254 765 Gene3D - 55 141 - -
Gma10g02254 765 SUPERFAMILY Bet v1-like 529 759 - -
Gma10g02254 765 CDD START_ArGLABRA2_like 272 500 - -
Gma10g02254 765 SMART HOX_1 66 129 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02254 Gma-Chr10 50103897 50109347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02254 37 762 Homeobox Transcription Factor Family AT3G61150 60.847 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma10g02254 START 4.5e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02254 K09338 - gmx:100794400 1462.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00127 01 1429912 1435617 Gma10g02254 10 50103897 50109347 ECH
Gma09g01930 09 44920117 44926321 Gma10g02254 10 50103897 50109347 ECH
Gma10g02254 10 50103897 50109347 Gma10g02254 10 50103897 50109347 ECH
Gma10g02254 10 50103897 50109347 Gma20g01465 20 41773776 41778533 GST