Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02251 ATGGCTCCGCCGCTCGAACACAACGGCGTTTCCACCAGCGGTGACTCTCTGAGATCTATTCCGACGCCGTTTCTCACCAAAACCTTCCAACTCGTCGACGATCACACCATCGACCATGTGATTTCGTGGAACGATTCTGGATCGTCCTTCATCGTCTGGAACACCACCGCTTTCGCCAAGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTCAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTCCGAAGAGACGAGAAGCGGCTCCTCTGCGAAATACAGCGACGGAAGATCCTCCCGGCAACGCCGCCGACCCGAGCGACTGCGACCGCGGCGGTTCTATCTCCGCTGCCGCTATCTACGATTCCGCCGGCGAAGCTGATCGTGTCGCCGTCGAACTCAGCGGAGGAGCAGGTGATTTCGTCTAACTCGTCGCCGGCGGAGCTGTTGGATGAGAACGACCGGCTGAGGAAGGAGAACATTCTGTTAACGAAGGAATTGGAGGAGATGAGATCGCTCTGCAACAATATATTCAATCTCATGTCGAATTACGCTAACGTTCAAGCGGACGGTGGTTCCGCGGGGGTGGCGGCGCGGTGCTTCGGCGAGGATGCGGTGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGTGATTGGTACGAAGCGAGCGAGAGAAGAGAATGATACGGTTTTGAGTCTGCATCAGCCGTTCCATGCGGACGTGAAATCCGAAGCGTTGGATTTCGCAAGACGTGGCGAAAATAAAAAAACGCCGTGGCTAAATCAATGTCATAGAGCAAATCAGAGAGTGTGTAATTGA 870 0.5322 MAPPLEHNGVSTSGDSLRSIPTPFLTKTFQLVDDHTIDHVISWNDSGSSFIVWNTTAFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRDEKRLLCEIQRRKILPATPPTRATATAAVLSPLPLSTIPPAKLIVSPSNSAEEQVISSNSSPAELLDENDRLRKENILLTKELEEMRSLCNNIFNLMSNYANVQADGGSAGVAARCFGEDAVEEMNPKLFGVVIGTKRAREENDTVLSLHQPFHADVKSEALDFARRGENKKTPWLNQCHRANQRVCN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02251 289 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g02251 289 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g02251 289 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g02251 289 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g02251 289 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g02251 289 Coils Coil 170 190 - -
Gma10g02251 289 Gene3D - 17 114 IPR036388 -
Gma10g02251 289 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Gma10g02251 289 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 208 - -
Gma10g02251 289 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 222 274 - -
Gma10g02251 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 222 274 IPR027725 -
Gma10g02251 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 208 IPR027725 -
Gma10g02251 289 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02251 Gma-Chr10 50052063 50053362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02251 2 289 HSF AT5G62020 49.845 1.30e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma10g02251 HSF_DNA-bind 5.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02251 K09419 - gmx:100808202 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02251 10 50052063 50053362 Gma10g02251 10 50052063 50053362 ECH
Gma10g02251 10 50052063 50053362 Gma20g01468 20 41839727 41840714 GST
Gma16g01606 16 36911117 36913020 Gma10g02251 10 50052063 50053362 PCT
Gma09g01378 09 37203141 37204726 Gma10g02251 10 50052063 50053362 PCT
Gma10g02251 10 50052063 50053362 Gma16g01606 16 36911117 36913020 PCT
Gma10g02251 10 50052063 50053362 Gma09g01378 09 37203141 37204726 PCT