Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02239 ATGAAGTTAAGAGCCAAGGCATTTTCTAGTAGAAGGCACGTTGACGAAGAACCACACCACTTTGCTTTACAGAGTGTGTGCAGCTGCAAGatgggtaaagcaccttgttgtgagaaacatggagtcagaaggggagcttggacacctgaagaagaccaatctttggttgactacatccacaaacatggccatggaagttggcgttcacttcccaaacatgcaggtctcctacgatgtggaaaaagctgtcggcttcggtggataaactatcttcgtcctggcatcaagcgtggcccatttactagtgaagaagaaagtacaattgttcaacttcatggcatgcttggcaacagGTGGGCTTCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTACTGGAATACCCATCTGAAGAAGCGTCTCCTTCGATCATGTTATTCCCAAAGAGCAAAACAGCTATGTGTGATTCCTGATCCAACGATTGTGAAGTCTGAATCTCCTTCGACGCGTCACATGGTACAATGGGAGAGTGTGAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCACAATGCTCAATTCATGGCCAACGAGTAAAACATGCCCTGATCACTTTCTTCAACTTTGGAATTCAGAGGTTGGAAAGTCATTTCGCATGATCAAGGGAAAGGAAGAAGGAGTAGTGAGTCAAAGCCTTGTCTCACAACCTTCATCCTCATCAAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAACACTGGAAATAGTAGTTGCATTCCAAAGCTGGAGGATGTGAGCATGGTTCATGAACAAACAAGTAGCTACAAACCAAAGCTTGATGATGACACAGCTGGTTCTGACTCAGGCAATTATGAATTTCTTGATACTTCTGATTCAACACTGAAGCACCTTCTACATATGCCTGATAGTGATATGGGATTCTTGGGACAGAATGATCATTTCCAAAATCTCCTTGATGGTACATGTGACTAA 1020 0.3167 MKLRAKAFSSRRHVDEEPHHFALQSVCSCKMGKAPCCEKHGVRRGAWTPEEDQSLVDYIHKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNYWNTHLKKRLLRSCYSQRAKQLCVIPDPTIVKSESPSTRHMVQWESVRVEAEARLSMESTMLNSWPTSKTCPDHFLQLWNSEVGKSFRMIKGKEEGVVSQSLVSQPSSSSKLESCSDVSLQVKNNTGNSSCIPKLEDVSMVHEQTSSYKPKLDDDTAGSDSGNYEFLDTSDSTLKHLLHMPDSDMGFLGQNDHFQNLLDGTCD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02239 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Gma10g02239 339 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 31 328 - -
Gma10g02239 339 Gene3D - 44 96 - -
Gma10g02239 339 SMART sant 43 93 IPR001005 -
Gma10g02239 339 SMART sant 96 144 IPR001005 -
Gma10g02239 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Gma10g02239 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 31 328 - -
Gma10g02239 339 CDD SANT 46 91 IPR001005 -
Gma10g02239 339 CDD SANT 99 142 IPR001005 -
Gma10g02239 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 91 IPR017930 -
Gma10g02239 339 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Gma10g02239 339 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Gma10g02239 339 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Gma10g02239 339 MobiDBLite consensus disorder prediction 278 298 - -
Gma10g02239 339 Gene3D - 99 146 - -
Gma10g02239 339 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Gma10g02239 339 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02239 Gma-Chr10 49975008 49977473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02239 31 327 MYB Transcription Factor Family AT3G61250 50.000 4.96e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g02239 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02239 K09422 - gmx:100807142 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02239 10 49975008 49977473 Gma10g02239 10 49975008 49977473 ECH
Gma10g02239 10 49975008 49977473 Gma20g01481 20 41924514 41926754 GST