Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02216 ATGGGTAGCATCGTGGAAGACGCCGACACCGACACGGTGGTGTATGTGGCGGTCGGAAAGAACGCCTACAAGACGCAGCAACTGTTGCATTGGACGGTTAAGAATTTCTCCGGCAAAGAAATTTGCCTTCTTCATATTCACCAGCCTCACTCTCTCAATTCGTTCTCAGACAGAAATCTCTCTGGGTATGAACCAAAAGACCATGCAACCAAGGCtttccaggagcatggaaatcaaacagtgcacaaacttctagaccaatacgttctcactctggtccctgcagggGTACGAGCCTACAAATTGTTGATTGAGATGGATGATATTGAGAAAGGAATCACAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGACAGATATAACTTGGGGGAATATAGTAAGCATACTTCTGACATAGAGACTGGCCCTGCATTATTGGTGCTCAATCCAAATACAGATGCCAAGCAATTTGAAAATATCAAATCAGAATCGATTCCTGTTGGTGCACTGAAATATTTCGATTCTTATGATATGAAAGAGATCAAAAGTGTCAGTTCCCACCTTTCCTTAAATTCAAAATGGCCGTTTAATAATGTCATGATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATAAAACATTTGAAAGCCAGTGTGCTAAGGAGATACGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGAAGTACAGAAAATGAAGAATCAGCGAGATGAAATACTTGAAGAATTGCAAATGGTCCAAGACCAAAATTCAGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACAGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAACAGAGAGATAGGCTTAGGATAGAGCATGCAAATGCAGTTAGGGAAGTCAAAGTGCTGAGAAAAATTGGGGAAGCAGATACTTCCTTCTCTTATCGGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATAAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGGTATGGAAGTGTTTACAAGGGACAGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTTGTCAGAGTTTATTAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATGGGAAGCTGTGCAGAGTCTCGGTCACTTGTGTATGAGTACATAAACAATGGCAGCCTTGAAAGCCATCTTGCCCACAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCCACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCTAGTTTAGTTCAGCGAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAACGTTTGGCATATGTGGATCCAGAGTATTTTGTCACTGGCAAGCTTACACCAGAATCGGATGTATATTCTTTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCCCTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACTCTTCAGCTGGTGAATGGCCGTTTTTTCAAACTGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCTGAAATCTGGAGTGTTCTTGAACCATTCAAAGCAACTTGCATTGACACGCCACCACATTTGATTTCTAAGAAGCTTCGTCGGATTCCTTCCCATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTACGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAACTAGACCACACTGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAGCAACAGTGA 2118 0.4037 MGSIVEDADTDTVVYVAVGKNAYKTQQLLHWTVKNFSGKEICLLHIHQPHSLNSFSDRNLSGYEPKDHATKAFQEHGNQTVHKLLDQYVLTLVPAGVRAYKLLIEMDDIEKGITKAIAQHNIRWLVMGAAADRYNLGEYSKHTSDIETGPALLVLNPNTDAKQFENIKSESIPVGALKYFDSYDMKEIKSVSSHLSLNSKWPFNNVMMDRSKLADLMFHEDKTFESQCAKEIRRRKEVEEQLAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANAVREVKVLRKIGEADTSFSYRVEFPAFSFVEINEATNDFDPSWKIGEGRYGSVYKGQLRNMHVAIKMLPSYGCQSLLEFQHQVEVLSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQRSLDSADTSTICNNPNERLAYVDPEYFVTGKLTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLKAVLDSSAGEWPFFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDTPPHLISKKLRRIPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02216 705 ProSiteProfiles U-box domain profile. 635 705 IPR003613 GO:0004842|GO:0016567
Gma10g02216 705 Pfam U-box domain 636 704 IPR003613 GO:0004842|GO:0016567
Gma10g02216 705 SUPERFAMILY Protein kinase-like (PK-like) 329 614 IPR011009 -
Gma10g02216 705 CDD STK_N 13 148 - -
Gma10g02216 705 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 130 - -
Gma10g02216 705 CDD RING-Ubox_WDSUB1_like 640 681 - -
Gma10g02216 705 Gene3D Transferase(Phosphotransferase) domain 1 426 621 - -
Gma10g02216 705 Gene3D HUPs 15 146 IPR014729 -
Gma10g02216 705 Pfam Protein tyrosine and serine/threonine kinase 358 606 IPR001245 GO:0004672|GO:0006468
Gma10g02216 705 Gene3D Phosphorylase Kinase; domain 1 324 425 - -
Gma10g02216 705 PANTHER OS02G0152300 PROTEIN 217 704 - -
Gma10g02216 705 PANTHER OS02G0152300 PROTEIN 10 144 - -
Gma10g02216 705 SMART Ubox_2 639 702 IPR003613 GO:0004842|GO:0016567
Gma10g02216 705 SUPERFAMILY RING/U-box 633 705 - -
Gma10g02216 705 ProSitePatterns Protein kinases ATP-binding region signature. 359 380 IPR017441 GO:0005524
Gma10g02216 705 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 10 144 - -
Gma10g02216 705 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 217 704 - -
Gma10g02216 705 Coils Coil 228 276 - -
Gma10g02216 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 705 IPR013083 -
Gma10g02216 705 ProSiteProfiles Protein kinase domain profile. 353 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02216 Gma-Chr10 49711673 49718840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02216 222 705 U-box Gene Family AT3G49060 53.893 7.47e-172 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gma10g02216 PK_Tyr_Ser-Thr 6.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02216 - - gmx:100799675 1403.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02216 10 49711673 49718840 Gma10g02216 10 49711673 49718840 ECH