LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g02188	ATGGCTGAGGACTGGGATCTCTTTGCCATCGTGAGAAGCTGCCAATCAGCCACCACAACAATTCCACAAACCACCACCAATAATACTTCCTCTTCCTTAGTTACTTCCACTATCAAGGAAGAAATATATGATGCATTTTCCTCTCCCAATATAGTGCCACCCAATACCAATGAGTTTCAAGAGCTACACCAATTGTTCACACCCTTTAACCCCACCAACAACACTAGTGCTCCGGGCATCAATCCCAATTCCCCTTATTTTGCAGAACAAGAAAGCCAGCAAATCAGTGAACACCTTCATATTTGGCCTCATTTTGTGCCAGAACAGTCTTCCACTCCCAGTTTCAATAGATTCCATGACCAACAACAACAGCAACAGATCAATCAACTACAGGCACTTCAGAAACACGAATTTCGACTACCCCAGAACATTTCTCCCACAGTTTCACCAAACGCACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAGATGGTGTGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCATATCCAAGGAATTACTATAGGTGCAGCAGTTCCAAAGGTTGTATGGCTCGAAAACAAGTCGAACGGAGTAACACTGAACCCGACATGTTCGTCGTTACGTACACCGGAGACCACTCGCATCCCCGGCCAACTCACCGGAACTCGCTCGCCGGAAGTACCCGGAGTAAGACTCTGGTAACCAATCCGCCACCGTCACCTGGGTCACTCTCCTGCTTCCAAGCCACCCCTTTTTCTTCTTCTTCTTCATCGCCACCACACTCTCCAACGTCGCCGGAGGAAGATCCACGGAAACCGCCGATTTAG	894	0.472	MAEDWDLFAIVRSCQSATTTIPQTTTNNTSSSLVTSTIKEEIYDAFSSPNIVPPNTNEFQELHQLFTPFNPTNNTSAPGINPNSPYFAEQESQQISEHLHIWPHFVPEQSSTPSFNRFHDQQQQQQINQLQALQKHEFRLPQNISPTVSPNAQPQTPKSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTEPDMFVVTYTGDHSHPRPTHRNSLAGSTRSKTLVTNPPPSPGSLSCFQATPFSSSSSSPPHSPTSPEEDPRKPPI	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g02188	297	Gene3D	WRKY domain	162	233	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g02188	297	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	3	289	IPR044810	GO:0003700
	Gma10g02188	297	ProSiteProfiles	WRKY domain profile.	174	240	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g02188	297	MobiDBLite	consensus disorder prediction	140	159	-	-
	Gma10g02188	297	SUPERFAMILY	WRKY DNA-binding domain	174	240	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g02188	297	MobiDBLite	consensus disorder prediction	140	170	-	-
	Gma10g02188	297	MobiDBLite	consensus disorder prediction	231	297	-	-
	Gma10g02188	297	MobiDBLite	consensus disorder prediction	242	284	-	-
	Gma10g02188	297	PANTHER	WRKY TRANSCRIPTION FACTOR 27-RELATED	3	289	-	-
	Gma10g02188	297	SMART	WRKY_cls	179	239	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g02188	297	Pfam	WRKY DNA -binding domain	181	238	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g02188	Gma-Chr10	49465910	49467025	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma10g02188	158	288	WRKY Transcription Factor Family	AT5G52830	68.182	1.17e-59	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma10g02188		WRKY	1e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g02188	K13425		-	gmx:100127366	570.852

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma18g02196	18	55762651	55764722	Gma10g02188	10	49465910	49467025	ECH
	Gma16g00288	16	3041246	3043246	Gma10g02188	10	49465910	49467025	ECH
	Gma01g02223	01	57442275	57443111	Gma10g02188	10	49465910	49467025	ECH
	Gma11g00193	11	1517954	1518722	Gma10g02188	10	49465910	49467025	ECH
	Gma05g02071	05	41968198	41969676	Gma10g02188	10	49465910	49467025	ECH
	Gma08g00174	08	1506030	1507788	Gma10g02188	10	49465910	49467025	ECH
	Gma10g02188	10	49465910	49467025	Gma10g02188	10	49465910	49467025	ECH
	Gma10g02188	10	49465910	49467025	Gma20g01530	20	42322706	42324676	GST
	Gma16g01529	16	35634549	35636080	Gma10g02188	10	49465910	49467025	PCT
	Gma09g01229	09	33848007	33849458	Gma10g02188	10	49465910	49467025	PCT
	Gma10g02188	10	49465910	49467025	Gma16g01529	16	35634549	35636080	PCT
	Gma10g02188	10	49465910	49467025	Gma09g01229	09	33848007	33849458	PCT