Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02180 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGACTTGGATTGAGCACAGGACAAGCTGTTCAAAAATGGGTTGGAGGGAGTTGTGAGTCTGATGAGATTTCTGGGGATCAAATTGTGTTGGAGCTCAACAACAGAGTCATTGATGGGAAGAACAGCGAAGTCACATTTGATAAATTTCCTTATTACTTAAGTGAAAGAATCCGATTTGTGTTAACAAGCACTGGATATGTTTATTTAAAACAAGACTTTTCCAAGCACTTGAGGAACCTTCATCCAGCAAGTAGAGCTATTTTGCTTTCTGGACCTGCAGAACCTTATCAGCAAAATCTTGCCCGAGCTTTAGCACATTACTTCAAATCAAAGTTACTGTTGCTAGACATTACTGACTTCTTGTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGAACCAtgttttcaaaggtccatatctgaggtgactttggagagagtgtctggtctgtttggttccttgtcagtccttccttcaacaggcagaactagaggtacactacatcgacagagtagtgaaattgaaaattccagcaatcctccaaagcttcgcaggaatgcctctactgcatgtgatacgattagcacttcccaatatggtccgtcagattcaggaaattttcttaCTCCTTTGAAGTGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTATAAGGTCTTGGTTTCTATCTCAGAAACCAGTTCTGTTATTTTATATATCAAGGATGTTGAGAAGCTCTTTGTTCGATCAACAAGGCTACACAATTTGTTCCAAAAGTTAATAAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCAGATCATTGATTCTGAAGATGATTGTACAGAAATTGATGAAAAGCTTAGTATGTTATTCCCTTACAACATTGAGATCAAACCACCTCAAGAAGACGCCCATCTTGCAAGCTGGAGAACGAAACTGATAAAGGACAAGGAAAAAAGTCTGTTTCAAGATAGCAGGAACCATATTGCTGAAGTACTTGCAGCAAATGATGTTGATTGTGATGACTTGGAAAAAGTAAACCATGCTGATACTATGCTACTCAGTAATTGCATTGAAGAGATTGTAGCGTCTGCAATTTCTCACCACCTGATGGAGACTAAACATCCAGAATACCGAAATAGAAAATTAGTTATATCACACAAGAGTTTGTCCCATGTATTGAATATTTTCCAGGAAAGTGAAAGTAATCTGGAGAATAAAGATTCAAACAAGAAAGATGGCGACAATGAGTTTGAGAAGCGCATGAGAGCAGAGGTTGTGCCTGCAAATGAGATAGGGGTTACATTTGAAGATATTGGTGCATTGGATGATATTAAAGAATTACTTGAAGATGTGGTCATGCTTCCCCTCAGAAGACCAGACTTATTCAAAGGTGGGCTTCTGAAGCCTTATAAAGGAATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATCTCTAACATCACTTCAAAATGGTTTGGGGAAGATGAAAAAAATGTCCGTGCTCTGTTTTCACTAGCAGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGAAAGCGGACTAAATATGGAGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGCCCACTGGGATGGAATATTGACAAAACCTGGTGAGCGAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAACATATAGACTTTAATGAGCTTTCAACCATTACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTTAGAGAGGTACTTCAACAGGAGAGGTTGAAGGAAAAGAAGAAAACTGAGGCAGAAGTTCAAAGCTCAGAAAATGCTTCTGATGCAAAAGGTGATAAAGATCACCAAGTGATTACTTTGAGGCCTTTAAACATGGAAGACATGAGACTGGCAAAGAGTCAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAGTGAGCTGAAGGAGTGGAATGAATTGTTTGGAGAAGGAGGTTCAAGGAAGAAGCAGCAGCTTACTTATTTCCTTTAG 2328 0.3591 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGDQIVLELNNRVIDGKNSEVTFDKFPYYLSERIRFVLTSTGYVYLKQDFSKHLRNLHPASRAILLSGPAEPYQQNLARALAHYFKSKLLLLDITDFLLEMQRKYGCPRKEPCFQRSISEVTLERVSGLFGSLSVLPSTGRTRGTLHRQSSEIENSSNPPKLRRNASTACDTISTSQYGPSDSGNFLTPLKCTSGFCFDEKLFVQSLYKVLVSISETSSVILYIKDVEKLFVRSTRLHNLFQKLIKKLSGSVLILGSQIIDSEDDCTEIDEKLSMLFPYNIEIKPPQEDAHLASWRTKLIKDKEKSLFQDSRNHIAEVLAANDVDCDDLEKVNHADTMLLSNCIEEIVASAISHHLMETKHPEYRNRKLVISHKSLSHVLNIFQESESNLENKDSNKKDGDNEFEKRMRAEVVPANEIGVTFEDIGALDDIKELLEDVVMLPLRRPDLFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISNITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGKRTKYGEHEAMRKIKNEFMAHWDGILTKPGERILVLAATNRPFDLDEAIIRRFERSRIMVGLPSAENREMILKTLLAKEKYEHIDFNELSTITEGYTGSDLKNLCTAAAYRPVREVLQQERLKEKKKTEAEVQSSENASDAKGDKDHQVITLRPLNMEDMRLAKSQVAASFAAEGSIMSELKEWNELFGEGGSRKKQQLTYFL 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02180 775 Gene3D - 461 634 IPR027417 -
Gma10g02180 775 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 441 775 - -
Gma10g02180 775 MobiDBLite consensus disorder prediction 182 208 - -
Gma10g02180 775 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 437 - -
Gma10g02180 775 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 437 - -
Gma10g02180 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 690 IPR027417 -
Gma10g02180 775 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 441 775 - -
Gma10g02180 775 ProSitePatterns AAA-protein family signature. 605 624 IPR003960 GO:0005524|GO:0016887
Gma10g02180 775 Pfam AAA+ lid domain 656 691 IPR041569 -
Gma10g02180 775 Gene3D - 635 705 - -
Gma10g02180 775 Pfam ATPase family associated with various cellular activities (AAA) 502 628 IPR003959 GO:0005524|GO:0016887
Gma10g02180 775 SMART AAA_5 498 636 IPR003593 -
Gma10g02180 775 MobiDBLite consensus disorder prediction 694 720 - -
Gma10g02180 775 CDD AAA 496 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02180 Gma-Chr10 49392808 49399801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02180 462 694 Calmodulin-binding Proteins AT3G56690 39.662 2.05e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02180 - - gmx:121172906 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02180 10 49392808 49399801 Gma10g02180 10 49392808 49399801 ECH
Gma10g02180 10 49392808 49399801 Gma20g01537 20 42380938 42391921 GST
Gma16g01519 16 35080779 35088291 Gma10g02180 10 49392808 49399801 PCT
Gma10g02180 10 49392808 49399801 Gma09g01199 09 32767681 32774819 PCT