Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02161 ATGTCGGGATTGGTTTGGCTCCGGTACTCTCTCTCTCTAAACTCTTTCTCTCTCCTCTGTCCCCCTCCATCCCCCGCTTCGGCGTCGTCGCCGGAACCCACATTCTTCGCCGGAAATTCTCCTCCGGCGCCGAGAAACACCCTCTTCTCACTCTCCAACCGAACCGGTGGGGTTTCGGGTTCTGTGAAGAGGAACAGATCCGAAACGATCGCAGAGGGTGGTGGCGTTTTGGTGAATCTCTCACATGGAATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACCAAgcattgattgctttgaaaaagggtgctcaactacttaaatatggtcgtaagggaaaacctaagttttgtccgtttagactttccaatGATGAATTGTCTTTAATCTGGATATCCAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGTGTCCTGAGAAGGACTATCTATCTTTTTCACTTATTTATAACAACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCACTGATATCTTCCGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGACAGTAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGCTAGTGTTTCACGTGACATCAGTTCTCCTGACGTTTCTGTTAGTCTGGCAAATACTTCTCCACAATCCTTTTACTTTGAGAGTACCTTAAATATTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCCGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAGTGCTAGTTATTTTAGCCCAAGGACAGATATTCTCCTCCCCAGGCCACTGGAGTCCAATGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTTGTCACAAGGCAAGGTGAACTTTTTACATGGGGTGAAGAGTCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGATTCAACCTCGTCTAGTTGAAGCAATGGCTTCCACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCCGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCGAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCGTGGCACACAGCCTTGATAACTTCAACTGGGCAGCTCTTCACATTTGGTGATGGAACATTTGGTGTCCTAGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAATAGCTGTTGCTTGTGGAGTTTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCAAGTGCTAGTGTATCATCAGATAAATTGTTTACATGGGGCGATGGAGATAAAAATCGCCTTGGACACGGAGACAAGGATGCCCGGCTTGAACCAACTTGTGTATCTTTACTTATTGATTCCAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACATCCGGAGAAGTTTTTACAATGGGAAGCTCTGTTTATGGTCAGCTTGGGAATCCCCAGTCCGATGGAAAGGTGCCATGTTTGGTTAAAGACAAGCTTGCAGGAGAATCCGTTGAAGAAATTGCATGTGGGGCTTATCATGTTGCTGTTTTAACTTCCAAAAATGAAGTTTACACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCGACTTTAGTTGAAGCCTTGAAAGATAGACATGTGAAATATATCGCATGTGGTTCGAACTACTCTGCCGCCATATGCCTTCATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGACACAACTGTTATAATTGTGGACTCGTGCACTGTCATTCATGTAGTTCTAGGAAAGCATTAAGAGCTTCCCTTGCTCCTAATCCTGGGAAGCCCTATCGTGTTTGTGATTCTTGTTTCGTAAAATTAATCAAGGTTGCAGAATCGGGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAGAAGTCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAGCTTGATAGTAAGGCAGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAACCACAATCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTATTGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACACCATCTGGAGTGAGTTCCAGGTCTGTATCCCCTTTCTCTAGAAGACCAAGCCCGCCTCGTTCAGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCTAAAAGTATTACTGATAGTTTGAAGAAAACAAACGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAGGTTGAGACCCTGAGACAGAGATGTGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCCGAGGAATCTGCCAAATCTAAGGCTGCAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCCGGTGCTTATGATGCTGAAAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGCCAAATGGCATCCACTATCCAGAATTAAACGGTGAACGTCACACCAGGGCAGAGTCCATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTATTGAATAGAACCGAGGGCACTTTGCCTGGAAGCTATGGAGCTAATCTTTACCTGCAAAACCGGGGATCTGTAACCTCTAATGGGACAGATGATTACCCGAATGTTAAATTGCCAAATGGCAGCAGCATGATTCAGCCAAGCAGCAGTACTGTGTCAGATATGGTTGATGGTAGGGATTCTGGAGATTTCCAAGATGATGAGAGTGGTTTGAGATCAAGAAACACCATAGTGCCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATTACACTGGTCGCCTTGGGTGATGGAACAAGAGATCTGAAGCGAGTGCGATTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGCGATAGGGTATACGAAAGGTACAATGTTCGAAGCACGGACAAGTCTTCCGGCCAAGCGGCACGTAGGACAGAGGGTGCTGGTTCACCTGTTTTATAA 3612 0.4452 MSGLVWLRYSLSLNSFSLLCPPPSPASASSPEPTFFAGNSPPAPRNTLFSLSNRTGGVSGSVKRNRSETIAEGGGVLVNLSHGMADLVSYRNADRDIDQALIALKKGAQLLKYGRKGKPKFCPFRLSNDELSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLCPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSNSPSESSASVSRDISSPDVSVSLANTSPQSFYFESTLNIERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKSASYFSPRTDILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVIQPRLVEAMASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSDKLFTWGDGDKNRLGHGDKDARLEPTCVSLLIDSNFHRIACGHSLTVGLTTSGEVFTMGSSVYGQLGNPQSDGKVPCLVKDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRASLAPNPGKPYRVCDSCFVKLIKVAESGNNNRRNAMPRLSGENKDRLEKSELRLTKTAVPSNMDLIKQLDSKAAAKQGKKADTFSLVRTSQPQSLLQLKDVVLSTAIDLKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRGQVETLRQRCELQELELQRSTKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLEPNGIHYPELNGERHTRAESISGSSLASIGLESSLLNRTEGTLPGSYGANLYLQNRGSVTSNGTDDYPNVKLPNGSSMIQPSSSTVSDMVDGRDSGDFQDDESGLRSRNTIVPANSNQVEAEWIEQYEPGVYITLVALGDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSSGQAARRTEGAGSPVL 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02161 1203 MobiDBLite consensus disorder prediction 869 886 - -
Gma10g02161 1203 Pfam Transcription factor regulating root and shoot growth via Pin3 1124 1179 IPR013591 -
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Gma10g02161 1203 MobiDBLite consensus disorder prediction 1075 1094 - -
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Gma10g02161 1203 MobiDBLite consensus disorder prediction 1075 1109 - -
Gma10g02161 1203 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Gma10g02161 1203 Gene3D - 257 540 IPR009091 -
Gma10g02161 1203 SUPERFAMILY RCC1/BLIP-II 318 708 IPR009091 -
Gma10g02161 1203 Pfam Pleckstrin homology domain 101 206 IPR001849 -
Gma10g02161 1203 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 526 536 IPR000408 -
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 432 IPR000408 -
Gma10g02161 1203 Gene3D - 541 717 IPR009091 -
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 380 IPR000408 -
Gma10g02161 1203 Coils Coil 915 949 - -
Gma10g02161 1203 Pfam Transcription factor BRX N-terminal domain 959 994 IPR027988 -
Gma10g02161 1203 CDD PH_PLC_plant-like 95 207 - -
Gma10g02161 1203 MobiDBLite consensus disorder prediction 1182 1203 - -
Gma10g02161 1203 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 96 1186 - -
Gma10g02161 1203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 779 IPR013083 -
Gma10g02161 1203 ProSiteProfiles BRX domain profile. 1125 1180 IPR013591 -
Gma10g02161 1203 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 711 773 IPR017455 -
Gma10g02161 1203 SUPERFAMILY PH domain-like 96 206 - -
Gma10g02161 1203 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 96 1186 - -
Gma10g02161 1203 MobiDBLite consensus disorder prediction 866 901 - -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 592 610 IPR000408 -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 650 671 IPR000408 -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 433 449 IPR000408 -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 364 377 IPR000408 -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 474 490 IPR000408 -
Gma10g02161 1203 PRINTS Chromosome condensation regulator RCC1 signature 490 504 IPR000408 -
Gma10g02161 1203 CDD FYVE_like_SF 716 769 - -
Gma10g02161 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 433 484 IPR000408 -
Gma10g02161 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 381 429 IPR000408 -
Gma10g02161 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 656 703 IPR000408 -
Gma10g02161 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 488 536 IPR000408 -
Gma10g02161 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 602 651 IPR000408 -
Gma10g02161 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 552 597 IPR000408 -
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 655 706 IPR000408 -
Gma10g02161 1203 SUPERFAMILY FYVE/PHD zinc finger 707 780 IPR011011 -
Gma10g02161 1203 Gene3D - 96 212 IPR011993 -
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Gma10g02161 1203 Coils Coil 964 984 - -
Gma10g02161 1203 Pfam FYVE zinc finger 707 772 IPR000306 GO:0046872
Gma10g02161 1203 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 367 377 IPR000408 -
Gma10g02161 1203 SMART fyve_4 705 774 IPR000306 GO:0046872
Gma10g02161 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 487 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02161 Gma-Chr10 49162099 49172287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02161 1126 1196 Major Intrinsic Protein MIP AT1G31880 46.479 8.91e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02161 - - gmx:100783270 2143.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02161 10 49162099 49172287 Gma10g02161 10 49162099 49172287 ECH
Gma10g02161 10 49162099 49172287 Gma20g01553 20 42540092 42547780 GST
Gma16g01508 16 34691945 34702635 Gma10g02161 10 49162099 49172287 PCT
Gma02g00756 02 7368903 7377240 Gma10g02161 10 49162099 49172287 PCT
Gma10g02161 10 49162099 49172287 Gma16g01508 16 34691945 34702635 PCT
Gma10g02161 10 49162099 49172287 Gma02g00756 02 7368903 7377240 PCT