Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02160 ATGACGGACGGCTTCTGGAATCGGCAGCAGCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATGATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATATTGCTCGAAATGATGACCACACCGGTCATCGAATGCTAAAGGACACTAAAACAATTGGATCTGCTTATGATCGGTACCTTCAAAGTGCAGGGCTTACTTCTTTTAATTCTGGGGAAGCCAGTGCGGTTGGCGGTGTTGGATTGGGAAGGGGTGCTGGTGGATTGCCACACCATTCACTAACTGATCCTGCTGTCATGGGGCATCCTGGTGGTGGTCATGATCATGCACGAAATGGACGGAATGTCAATTATGGTGGTCAGTTACCATTAGATGCAGCTTCCATGCCTGGACCTGAGACTGTACCTCTACCCCCAGATGCTTCAAGTACTTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGAATCCAAACATCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTTCTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACCTCGTGGCAAGAGGTGA 756 0.4775 MTDGFWNRQQPLHPSSTMLKRPRTEYDMSPSGLTSGGNEMHNYIARNDDHTGHRMLKDTKTIGSAYDRYLQSAGLTSFNSGEASAVGGVGLGRGAGGLPHHSLTDPAVMGHPGGGHDHARNGRNVNYGGQLPLDAASMPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNPESSHLRLQFSRFPGPRSGPGPRGKR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02160 251 CDD RRM_RBPMS_like 152 234 - -
Gma10g02160 251 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 251 - -
Gma10g02160 251 Gene3D - 148 238 IPR012677 -
Gma10g02160 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 238 IPR000504 GO:0003723
Gma10g02160 251 PANTHER RNA-BINDING PROTEIN 2 6 251 - -
Gma10g02160 251 MobiDBLite consensus disorder prediction 1 38 - -
Gma10g02160 251 SUPERFAMILY RNA-binding domain, RBD 129 246 IPR035979 GO:0003676
Gma10g02160 251 MobiDBLite consensus disorder prediction 1 17 - -
Gma10g02160 251 SMART rrm1_1 153 227 IPR000504 GO:0003723
Gma10g02160 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 222 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02160 Gma-Chr10 49138114 49143855 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02160 - - gmx:100815695 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02160 10 49138114 49143855 Gma10g02160 10 49138114 49143855 ECH
Gma10g02160 10 49138114 49143855 Gma20g01556 20 42567633 42572948 GST
Gma16g01507 16 34664332 34671787 Gma10g02160 10 49138114 49143855 PCT
Gma02g00754 02 7342137 7346017 Gma10g02160 10 49138114 49143855 PCT
Gma10g02160 10 49138114 49143855 Gma16g01507 16 34664332 34671787 PCT
Gma10g02160 10 49138114 49143855 Gma02g00754 02 7342137 7346017 PCT