Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02147 ATGTCCTTCCGCAGTATAGTTCGTGAAGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATAACAGGGGCAAGTCACGTAGTTTGGTCCACGAGTTGCAGGATCAGCCACCAGTTATACAGAACAGCCGGTGGGCTAGCCTTCCTCCTGAGCTTCTTCGCGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCGTGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCTTGAAACAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTACAACAATGCTATGCTGTCTCCACCTGGCCGCAGCCGTAGGTTTTCAAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAATATTGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGGCCACGAAGGATGAATTGCACAATGTACTCAATTCCTGCATCATCCATGGAGCCTAATGGCGTTGTCCCAGGCCAGCCAGAGCTCCTTCCCCGTGCCCTTGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATCGACAATTCAACCGAGTTTAGCAGCTCTAGGTTCTCTGACATAATGGGAACTGGCATTGAAGACGAGGAGGGAAAGGTGAGACCACTAGTTCTCAAGAACAAGTCTCCAAGGTGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCCTCAACACCGCCAGCAGCCGTTGCTCCTACAGGAACAGGACCTACACCATCTCAGCCAACACAGTCTTCTTCTGACCCTGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTTTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGTTTTGACACAAAACTGGCTTGTGAATAG 1293 0.4671 MSFRSIVREVRDGFGSLSRRSFEVRLPGHNRGKSRSLVHELQDQPPVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLGLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSMEPNGVVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSSRFSDIMGTGIEDEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTPPAAVAPTGTGPTPSQPTQSSSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02147 430 MobiDBLite consensus disorder prediction 372 387 - -
Gma10g02147 430 Pfam Tub family 114 425 IPR000007 -
Gma10g02147 430 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Gma10g02147 430 PANTHER TUBBY-RELATED 1 430 - -
Gma10g02147 430 Gene3D - 48 101 - -
Gma10g02147 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Gma10g02147 430 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Gma10g02147 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 430 - -
Gma10g02147 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Gma10g02147 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Gma10g02147 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Gma10g02147 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Gma10g02147 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Gma10g02147 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Gma10g02147 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Gma10g02147 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Gma10g02147 430 MobiDBLite consensus disorder prediction 365 387 - -
Gma10g02147 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Gma10g02147 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02147 Gma-Chr10 48961840 48965916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02147 1 430 TUB Transcription Factor Family AT1G76900 68.845 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma10g02147 Tub 9.6e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02147 K19600 - gmx:100810531 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02147 10 48961840 48965916 Gma10g02147 10 48961840 48965916 ECH
Gma10g02147 10 48961840 48965916 Gma20g01567 20 42750406 42754759 GST
Gma16g01492 16 34271529 34277717 Gma10g02147 10 48961840 48965916 PCT
Gma02g00735 02 7109355 7114740 Gma10g02147 10 48961840 48965916 PCT
Gma10g02147 10 48961840 48965916 Gma16g01492 16 34271529 34277717 PCT
Gma10g02147 10 48961840 48965916 Gma02g00735 02 7109355 7114740 PCT