Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02135 atgatCACTGTTTCTTTGTTTCTGTGTGAAATTCCACAAGCCAAAATCATCTCCGAGACACCAACAACCGCAACCACATATTCTTTATTTATTGAAGTGGATCAATACATAAAAAAGAGGGGTTTAGGTTCAGGTTCGGGGAAGTTCTTGGCGGCGGAACAAGGCGGCGATGAGGAAACGGAAGAGAGTACTGTAGGTTCGGTTCCGAGCCATGTGGTCTCTGCAGCTTCGGCCCAAACCAATAATCAGTGGGTCCCGGCAAGTGGTTCTCCAATGATGTCACGTTTTATGAATGCTCCTTCCTCTCCAGGATTGTCTCCTCTGTTTGGCGTTGGCCACAAGAGAGCCCGTGAAGACGACACGGGTGCGGGTGCAAGTGTGGGTCTTGGTGTTGTTGCAGCAGCTTCTTCACAAACACAAGGGAATGAAAGTGGCGGCGGCGAGAGGAGGAGGAGATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCAGCCAGAGCTTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTTAATTTCCCCGAAAATGTTGTACAGGTTCAACCTCCTCCTCCGCTTCCAAATTTACCGGCAAGTGCGGTTGCTGGTTCCGGTTCCGGTTCGGTTGTGACAGGTTTTGCGCCGACGGTGATGCAGGGGACGCGGTTTCAGGACTCCTCTGATTTTCTGAGAGACTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGAGTTCCATGGACTCGACCACTGGTTCTTTGATTCGCAAATGGCAGCGTTTCAATCTTCTTTGCCGTCTTCGTTGTTGCCATCACCGCCGCCGCCGGCGTTTCTGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCTAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCACGGCGGAGAAGACGGTGGTAGCGGGTCGGGGTTCACAGAGCTTCTACCTTCGACTTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA 1095 0.5333 MITVSLFLCEIPQAKIISETPTTATTYSLFIEVDQYIKKRGLGSGSGKFLAAEQGGDEETEESTVGSVPSHVVSAASAQTNNQWVPASGSPMMSRFMNAPSSPGLSPLFGVGHKRAREDDTGAGASVGLGVVAAASSQTQGNESGGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVQVQPPPPLPNLPASAVAGSGSGSVVTGFAPTVMQGTRFQDSSDFLRDYWGYSQLLRSTGEFHGLDHWFFDSQMAAFQSSLPSSLLPSPPPPAFLPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSGFTELLPSTWSDTSGYPPPPPG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02135 364 Pfam AP2 domain 152 201 IPR001471 GO:0003700|GO:0006355
Gma10g02135 364 MobiDBLite consensus disorder prediction 135 154 - -
Gma10g02135 364 Gene3D AP2/ERF domain 151 211 IPR036955 GO:0003700|GO:0006355
Gma10g02135 364 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Gma10g02135 364 MobiDBLite consensus disorder prediction 320 364 - -
Gma10g02135 364 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Gma10g02135 364 CDD AP2 160 210 IPR001471 GO:0003700|GO:0006355
Gma10g02135 364 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Gma10g02135 364 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Gma10g02135 364 PANTHER DNA-BINDING DOMAIN 76 326 IPR044808 GO:0003700|GO:0009873
Gma10g02135 364 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Gma10g02135 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 76 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02135 Gma-Chr10 48834682 48836248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02135 142 212 AP2-EREBP Transcription Factor Family AT5G61890 77.465 4.09e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma10g02135 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02135 - - gmx:100777915 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02135 10 48834682 48836248 Gma10g02135 10 48834682 48836248 ECH
Gma10g02135 10 48834682 48836248 Gma20g01580 20 42887819 42889147 GST
Gma16g01476 16 34013840 34016131 Gma10g02135 10 48834682 48836248 PCT
Gma02g00722 02 6952675 6954960 Gma10g02135 10 48834682 48836248 PCT
Gma10g02135 10 48834682 48836248 Gma16g01476 16 34013840 34016131 PCT
Gma10g02135 10 48834682 48836248 Gma02g00722 02 6952675 6954960 PCT