Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02102 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGACTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGGGTCGTGGCGGTCCTGGAATGACTACAAATGTTGACCATCAGAAACAAGTTGGCATCCCAGCTGTCCTTGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTAGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGTTGACTGAGATTATCTCTGAGCTGAAGGGAATGGCTACACAGAACAAGGAACTGGCTCGTCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCGAACCTTAGGCTGGTTTCAGATCAAACCTCACAGTCTTTAATGAATGAAGGCCAGCTGGGTCAGCCATCATTGGTTCAAACTCTGTCAGGCCTTCCTCCTCCTGGGCAGGGCAAGTTGCAGCCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGGCTCCTAATCAATTAACTGCACATCCAAAGCCTCCAGTGCAGCCTCGGATTCCCCTTCAGCAACATCCAAACAATCTTGTACTGCCAGGAACATTGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGCACGTCCTCCAGGTTTGGGCAGTTTGTCTGTTAGGCCTCTAATTCAACCGGGAACTTCAACTGCTCTGAACCAGCAAATGCATCCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGGTTCGTCCAGACGCCAACTTTTGCCAACATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAGCTAATACACATTCAAAATCAAACATTCCTTTGGGAGTAGAGAAAACAAACATGGTTCATGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTCATGAAATTGGATGAGGGAAGGAGTGCCCCTCTTTCTTCAGGAATTTCAGACATGCCTTTCACCGATGGATCATCTCATATCCTGGGAAGAAGTTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATTTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAACAATTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGATACAGCCCTCATAA 1665 0.4559 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDHQKQVGIPAVLGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLMNEGQLGQPSLVQTLSGLPPPGQGKLQPGLTPYAQEGQVNTIPHNPLAPNQLTAHPKPPVQPRIPLQQHPNNLVLPGTLSGQSNLMLPSARPPGLGSLSVRPLIQPGTSTALNQQMHPSLLQHSVHVGNSTVGHNIQMVRPDANFCQHCPSMSSANSQLLSKGDKSSKVIEDLNWAKRANTHSKSNIPLGVEKTNMVHDSSESFTRPSKVMKLDEGRSAPLSSGISDMPFTDGSSHILGRSSLPVHAAPKAEGQYSEQQFSQLPPDVESVLLQQVLNLTPEQLSSLPPDQQQQVIQLQQALRRDQIQPS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02102 554 MobiDBLite consensus disorder prediction 85 109 - -
Gma10g02102 554 Gene3D - 151 232 - -
Gma10g02102 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Gma10g02102 554 Gene3D - 1 115 IPR012677 -
Gma10g02102 554 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Gma10g02102 554 Pfam Transcription termination and cleavage factor C-terminal 516 548 IPR026896 GO:0031124
Gma10g02102 554 MobiDBLite consensus disorder prediction 255 276 - -
Gma10g02102 554 SMART rrm1_1 10 83 IPR000504 GO:0003723
Gma10g02102 554 Gene3D - 511 551 IPR038192 -
Gma10g02102 554 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 549 - -
Gma10g02102 554 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 549 - -
Gma10g02102 554 CDD RRM_CSTF2_CSTF2T 11 85 - -
Gma10g02102 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Gma10g02102 554 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02102 Gma-Chr10 48530260 48536606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02102 11 165 Eukaryotic Initiation Factors Gene Family AT1G22760 26.923 3.48e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02102 K14407 - gmx:100794399 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02102 10 48530260 48536606 Gma20g01614 20 43233675 43241161 GST