Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02087 ATGGCCGGCAACCCCGCCACCACTTCCTCCTCCGCATTATCTCCCGAGAAATTTAATTTCAATTTCTCCCCCGATAACCCCTCCCGAATCACCCTCACTTCGGATCAGGTCAACCACTGCACCCAAGCCCTCAACATTCTGAAGGAGAAGCTCCACGCTCCTAACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACGCCGAGCGAGATGAGGAGAAGATGCACCGTCGCGTATGACGACGTCAATTTGAGGAAAAACCGATACACCGACGTTCTGCCATTTGACAAGAACAGGGTTGTTCTCAAATCTAGTACTGATTATAGACCTGAAGCACAGGGGTATATCAATGCAAGCCTTGTCTCGacctcctcagctggaaacgtgtcccagtttatagccacgcaaggtccacttcaacatacttacgaggatttctgggaaatgatcatccaatatcactgccctgcaattatcatgcttactaggttggtggataattacaagatgacaaaatgtggagattaTTTTCAAGCTGAGGATAGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTCGTGCTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGAAGATGCGCCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAAAGATACATTTGCTGTGCGTGAAATTCTGAAAAGATTATACCATTTACCACCAAACTTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATAGTTGCTGGTGATATGTCTGCTGTAGATATTGCTAAGACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAACGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAGTAG 1011 0.3848 MAGNPATTSSSALSPEKFNFNFSPDNPSRITLTSDQVNHCTQALNILKEKLHAPNVITQEFAHLQANRITPSEMRRRCTVAYDDVNLRKNRYTDVLPFDKNRVVLKSSTDYRPEAQGYINASLVSTSSAGNVSQFIATQGPLQHTYEDFWEMIIQYHCPAIIMLTRLVDNYKMTKCGDYFQAEDRPREVGNISIIGKWENTTETSLVLRHLEVNHREVEDAPLSVLHIQYPEWPDHGVPKDTFAVREILKRLYHLPPNFGPIVVHCSAGIGRTGTYCTIHNTIQRIVAGDMSAVDIAKTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02087 336 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 318 IPR000387 GO:0016311|GO:0016791
Gma10g02087 336 SMART PTPc_3 56 329 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 CDD PTPc_plant_PTP1 118 322 - -
Gma10g02087 336 Pfam Protein-tyrosine phosphatase 86 325 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 Gene3D Protein tyrosine phosphatase superfamily 29 329 IPR029021 -
Gma10g02087 336 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
Gma10g02087 336 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 18 334 - -
Gma10g02087 336 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 18 334 - -
Gma10g02087 336 ProSiteProfiles PTP type protein phosphatase domain profile. 57 327 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 329 IPR029021 -
Gma10g02087 336 SMART ptp_7 224 326 IPR003595 -
Gma10g02087 336 PRINTS Protein tyrosine phosphatase signature 117 124 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 PRINTS Protein tyrosine phosphatase signature 135 155 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 PRINTS Protein tyrosine phosphatase signature 223 240 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 PRINTS Protein tyrosine phosphatase signature 261 279 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 PRINTS Protein tyrosine phosphatase signature 294 309 IPR000242 GO:0004725|GO:0006470
Gma10g02087 336 PRINTS Protein tyrosine phosphatase signature 310 320 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02087 Gma-Chr10 48422819 48428465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02087 35 333 Protein tyrosine phosphatase (PTP) family AT1G71860 69.231 2.95e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02087 - - gmx:548044 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02087 10 48422819 48428465 Gma20g01628 20 43367967 43371947 GST