Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02062 ATGGGTGGTTCCGTTTTCACTCACTTCCTCGTTCTCCCCTCCTCTTCTACTCCTTCTCTTTCCACTCTCTTCCCATCCAAATTCCCCACCAGACCCATCAATGAATCTTTTCCCTTCACCCTTACCTGCAACCAATTCCCTTCCAAACTCACTACTTCGCGGCCTTCCCAATTCTCAGCTCCTCCTAGTTACTCATGCTCTGTAAAAAAGATAAAAGCTTCGGGAAGTCAGCAAACAGGATCCATTCGACATGGAGACAACCTTGATGCAATGAATAGCAGGAGTTTGCTGCAGAAGTTTCAGAGGAAAATGCCAACGGTATTCCTTTTCAACAAGCAATCTATGAGTAATTCCCTTGACTTTACAACCAAAGATATTGATGACAGGGAAAGATCATCCAAATGGGTTTCAGCATTCCTCTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCATGTGCAAGCAGCTCAGCAAGAATAAATGAGATATATGAGGTTGGAGAGTTGTTTGATTTAAGCATCCAACTAATATACTTGATATTGCTATTGGGTTTGCTAGGGAGTGGGACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGGTTTACAACGCTCTTGGTGTGAGCTATGTCCGCGATGGGAAAGTTGACAAAGGAATTGCTCAATTTGAGACAGCTGTCAAGCTTCAACCAGGCTATGTCACAGCTTGGAACAATCTCGGTGATGCCTTTGAGAGTAAAAAAGACTACAAGTCTGCTCTGAAGGCATTTGAAGAAGTCCTACTATTTGATCCTAACAACAAGGTTGCCCGGCCTAGAAGAGATTCTTTGAAGGGACTTGTTGATGCAACCAAAGGAGTTACTGTCATCAAGTTCCGTTGGGCTTTCAATCTGTGGCTGGATTTTGATTTCTCTGCGTTTAAAATGGATCCAAAAGGAAGCTTATGCGCTAAAAACTGCACAAGGACCTCTTCCTTAACTTCTCCTGGGAATGGACTACAAACAAATTTGTCCTCTGATCCTCCCTCTTTCTATGGGGAAAATTGTCCACTGAGTAACTCATCACATACCAGTAAACTCCAAGATTGGAATCCAAGTGCAATGTTGAATAACCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTTCAGGATCTAGTGCATGTAATTGTTAATAAAAAGTGCCAACCTTTTGGACAACCTCATGAACTGGTGACTCAGGAACAGCAGCTCATCACAGCCGATCTTACATCGATCATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAACACAAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTAGTGGTATTAGGCCACAAAATAACAGTGGAAATAAACTGTTTGATCAGTCCACTCAGAATGATCTACCAAATAAATTGGAAATGGAACAAAACTACAATATGGAAGAGCATGAGCCAAAAGATGAAGAAGATGCGGATGAGGGAGAAAATCTTCCACCCGGTTCCTACGAGATTTTGCAATTAGAAAAAGAAGAAATCCTCGCTCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGACAAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAAACCGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGCCATACACCTGCTATTCCTTTGGATGAAACCAAAGGAGTGGCTGAGCCACCTGATATCCAGAACAGAGAAAGCAACAATAAGGTAGAAAGTATTAATTTCTGTTTTGGATCAAATCCTTCAAGTGAAAACGTAGTTCAAAACATCATGGACATGAAAGGTAATATTGATGATCCCATGAATTATTTCTCATCGTTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAATGAATTCTCCCAACCTCCATTTGAAGATTCAGAAGCTTCTTTCTCTTTTCCCATGTCGGGATCCTATAATTATGCTCCCAAATTTGATAGCGACAATTTATAA 2526 0.424 MGGSVFTHFLVLPSSSTPSLSTLFPSKFPTRPINESFPFTLTCNQFPSKLTTSRPSQFSAPPSYSCSVKKIKASGSQQTGSIRHGDNLDAMNSRSLLQKFQRKMPTVFLFNKQSMSNSLDFTTKDIDDRERSSKWVSAFLFGQTISVISPDVSCASSSARINEIYEVGELFDLSIQLIYLILLLGLLGSGTFFVIRQVLVRRELDLSAKELQEQVRSGDAGATELFELGAVMLRRKFYPAATKFLLQAIEKWDGDNPDLAQVYNALGVSYVRDGKVDKGIAQFETAVKLQPGYVTAWNNLGDAFESKKDYKSALKAFEEVLLFDPNNKVARPRRDSLKGLVDATKGVTVIKFRWAFNLWLDFDFSAFKMDPKGSLCAKNCTRTSSLTSPGNGLQTNLSSDPPSFYGENCPLSNSSHTSKLQDWNPSAMLNNLSFLEEKIHQLQDLVHVIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVGQLDQLHGINLPFGSEPSSGIRPQNNSGNKLFDQSTQNDLPNKLEMEQNYNMEEHEPKDEEDADEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDKYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGVAEPPDIQNRESNNKVESINFCFGSNPSSENVVQNIMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFSQPPFEDSEASFSFPMSGSYNYAPKFDSDNL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02062 841 ProSitePatterns Zinc finger C2H2 type domain signature. 596 616 IPR013087 -
Gma10g02062 841 ProSiteProfiles TPR repeat region circular profile. 294 327 - -
Gma10g02062 841 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
Gma10g02062 841 ProSiteProfiles Zinc finger C2H2 type domain profile. 594 621 IPR013087 -
Gma10g02062 841 SMART tpr_5 294 327 IPR019734 GO:0005515
Gma10g02062 841 SMART tpr_5 260 293 IPR019734 GO:0005515
Gma10g02062 841 SUPERFAMILY TPR-like 223 331 IPR011990 GO:0005515
Gma10g02062 841 MobiDBLite consensus disorder prediction 515 545 - -
Gma10g02062 841 SUPERFAMILY beta-beta-alpha zinc fingers 593 616 IPR036236 -
Gma10g02062 841 MobiDBLite consensus disorder prediction 521 545 - -
Gma10g02062 841 Gene3D Classic Zinc Finger 578 648 - -
Gma10g02062 841 Gene3D Tetratricopeptide repeat domain 216 338 IPR011990 GO:0005515
Gma10g02062 841 Pfam Tetratricopeptide repeat 265 324 - -
Gma10g02062 841 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 403 828 IPR044300 GO:0010044|GO:0010447
Gma10g02062 841 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 403 828 - -
Gma10g02062 841 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Gma10g02062 841 SMART c2h2final6 681 703 IPR013087 -
Gma10g02062 841 SMART c2h2final6 643 676 IPR013087 -
Gma10g02062 841 SMART c2h2final6 594 616 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02062 Gma-Chr10 48143622 48152098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02062 562 835 C2H2 Transcription Factor Family AT1G34370 68.929 3.25e-132 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g02062 TPR_16 3.9e-09 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02062 - - gmx:100170687 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02062 10 48143622 48152098 Gma10g02062 10 48143622 48152098 ECH
Gma10g02062 10 48143622 48152098 Gma20g01651 20 43618681 43622412 GST