Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02060 ATGGAAGATTCAGAGGAGGATGAGCTTTTGAATCTTAGCCTTTCAGTTGCTGCTAATAGGGAAAGGAAAAAGAAGGGAAAGACTACGATTAGGGAACATCACGTTTCCATGACTACTACTACTACAACTAGGAATTCCTATGAAAGCTACCATGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTGAGACAAGACCATAGGAGGAAAGGTGTTGTGGAAGATGGCAATGGCCTCCCTTTGATCCATTTGTTGCTCTCAACCGCAACTTCAGTTGATGACAACAACATGGACTCATCCTTAGAGAATCTCACTGATTTATACCAAACCGTTTCCGTAACTGGTGACTCGGTTCAACGTGTTGTGGCCTATTTCGTTGATGGTTTGGCAGCAAGGCTTCTCACAAAGAAATCTCCATTCTATGACATGCTCATGGAGGAACCTACAACCGAAGAAGAGTTTCTTGCATTCACGGATCTCTACAGGGTTTCACCTTACTTCCAATTTGCACATTTCACAGCAAACCAAGCCATTTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGTGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAATCTCTTTCAGAAAAAGCAACAAGTGGAAACCGCATATCCCTGAGGATAACTGGTTTTGGGAAGAGTCTCAAGGAGCTTCAAGAAACCGAGTCTAGGTTGGTTAGTTTCTCAAAGGGTTTTGGAAGCCTCGTGTTTGAGTTTCAAGGGCTTCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAACGAGACCGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCCTCCATTGTTGTGGTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTCTTGTCGAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTTGATGATTGTCTTCCACTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGGTGTGGATTGCCCCAAGTATGAGAGGATGGAAGCATGGAAGGCTAGAATGGAGAATCATGGGTTTGTTGCCACAAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACTCATTTTTGTCCTCTTCAGTTTGAGGAAGAGGGAGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAATCAGTCTGA 1398 0.4421 MEDSEEDELLNLSLSVAANRERKKKGKTTIREHHVSMTTTTTTRNSYESYHEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATSVDDNNMDSSLENLTDLYQTVSVTGDSVQRVVAYFVDGLAARLLTKKSPFYDMLMEEPTTEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKSLKELQETESRLVSFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGGVDCPKYERMEAWKARMENHGFVATKISSKSMIQAKLLLKMRTHFCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02060 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 463 IPR005202 -
Gma10g02060 465 ProSiteProfiles GRAS family profile. 75 463 IPR005202 -
Gma10g02060 465 Pfam GRAS domain family 84 463 IPR005202 -
Gma10g02060 465 Coils Coil 354 374 - -
Gma10g02060 465 PANTHER OSJNBA0084A10.13 PROTEIN 8 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02060 Gma-Chr10 48124784 48126181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02060 35 462 GRAS Transcription Factor Family AT3G54220 34.096 4.16e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma10g02060 GRAS 4.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02060 - - gmx:100809458 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02060 10 48124784 48126181 Gma20g01655 20 43647188 43648576 GST
Gma16g01428 16 33304923 33306594 Gma10g02060 10 48124784 48126181 PCT
Gma02g00680 02 6560393 6561823 Gma10g02060 10 48124784 48126181 PCT
Gma10g02060 10 48124784 48126181 Gma16g01428 16 33304923 33306594 PCT
Gma10g02060 10 48124784 48126181 Gma02g00680 02 6560393 6561823 PCT