Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02020 ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCGAGGACGTCGACGGCGGCGCTGCCACCTTGCCTTCCGTCTCCGCCGGAAACAGCAACTCGCTGGCGAGCATCTGGCCCTCCGAGTCCGACTCGTTTCCCGCCTCCGACTCGGTGTTTTCCGGCAACAGTGCTTCGGACCTCTCGGCCGAGCTATCCGTTCCGTATGAAGACATTGTCCAATTGGAATGGTTGTCCAACTTTGTGGAGGATTCCTTTTGTGGGGGGAGCCTAACAATGAACAAAGTGGAAGAGCCATCATGTACCACTAAGGAGGACTCAGTCAACACCCAATTTCACACATCAAGCCCAGTTTCTGTCCTCGAAAGTAGCAGTTCTTGCTCTGGTGGCAAGACTTTGCCACCTCGCAGTCCAGAGATTTACATCCCTGTGCCGTGTGGACGTGCACGCAGCAAGCGTCCACGTCCAGCAACCTTCAATCCTAGGCCTGCCATGAACCTTATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAATATGCAGCCTAATGTCATATCATCCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACTTGTTCCCAAGATGCCGAAGCTAGCTTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGGTGCCACTTCCAGTAGCTCCAGCTGATAACAATCAAAATGCCTCACAACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCGCAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAATACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCCGTGCACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGGGATTTGACAAATCTGGTTTTGCAATCAATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1044 0.5134 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAATLPSVSAGNSNSLASIWPSESDSFPASDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMNKVEEPSCTTKEDSVNTQFHTSSPVSVLESSSSCSGGKTLPPRSPEIYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKASSDSENFAESQLVPKMPKLASGEPKKKKKVKVPLPVAPADNNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGFDKSGFAINSAASPELIPNTNSSLTLEYM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02020 347 MobiDBLite consensus disorder prediction 115 145 - -
Gma10g02020 347 MobiDBLite consensus disorder prediction 115 177 - -
Gma10g02020 347 MobiDBLite consensus disorder prediction 198 232 - -
Gma10g02020 347 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
Gma10g02020 347 SMART GATA_3 247 297 IPR000679 GO:0006355|GO:0043565
Gma10g02020 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
Gma10g02020 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 310 - -
Gma10g02020 347 Pfam GATA zinc finger 253 286 IPR000679 GO:0006355|GO:0043565
Gma10g02020 347 CDD ZnF_GATA 252 309 IPR000679 GO:0006355|GO:0043565
Gma10g02020 347 PIRSF Txn_fac_GATA_plant 3 339 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gma10g02020 347 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Gma10g02020 347 Gene3D - 248 297 IPR013088 GO:0006355|GO:0008270
Gma10g02020 347 PANTHER GATA TRANSCRIPTION FACTOR 8 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02020 Gma-Chr10 47672592 47675948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02020 19 315 C2C2-Gata Transcription Factor Family AT4G32890 38.284 3.53e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma10g02020 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02020 - - gmx:100815693 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02020 10 47672592 47675948 Gma20g01688 20 44066558 44068496 GST
Gma16g01419 16 33178907 33181870 Gma10g02020 10 47672592 47675948 PCT
Gma02g00672 02 6492026 6497310 Gma10g02020 10 47672592 47675948 PCT
Gma10g02020 10 47672592 47675948 Gma16g01419 16 33178907 33181870 PCT
Gma10g02020 10 47672592 47675948 Gma02g00672 02 6492026 6497310 PCT