Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02011 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCCCTGGCTCCGGAATTTCGCCCTACAGACACTGAATTTGCCGACCCAATTGCTTATATTTCGAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCGTTTCCCAAACCTTCAAAAAAATACGTTTTTTCCAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTTGGTCCAGATAATAGTTCATTAGGTGTTTGTAATTCATCGAAAACCAGTTCTGGGGATGGTAGTAGTGACGGGGTGTTGCGAGCCGTGTTTACTACAAGGCATCAAGAACTGGGGCAGAGTCAGAGTGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGCTTATACTCTGGAGCAGTTTGAGTCTAAATCGAAGTCTTTTGCGAAAAGTGTGCTAGGATCGGTGAAGGATGTTTCTCCTCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAGAAGCCTATATATGTAGAGTATGCAAATGACGTTCCTGGGTCTGCTTTTGAAGAGTCCAAGGGTCAATTTCATTATAGTCATAGAAGGCAAAGGAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAACGGGTTGCGTAAGAGATACCCAAACCGATGAGACCAAGGTTGCTTCTGTCCAAAGTCATTCGGACACATGTTTGCAGATGGCCAAATCAAGTACAACTGTGTCAACATTTTCATCAAATGATGATTCACAATCTTCTAAGGAAAAGAGTTCAGATGCCAGCAATGAAATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCGTCTGGCTCACTAACACGTTTTATGCCTGATGATATTCCTGGTGTCACGTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACCTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACTGAGGGTTATAGTGGTAACATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACTCAGCACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTACGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGCGTGCGTAGTTCTCGTCTAAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTTATAGAAGACATGCTGCAGGAAAACAAGCTTCTATCCATTCTTCTTGGGAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCTGATTTACTGCCTGATTCCAGCAAAGATTTTCAGTTGCCTGATTTAACTTCTACTACTGGATCCTCTATGGCACATATGTCAAATATTAGTTCTGCAGAAAAGAGTGGTCATTATCTGCTTGATGAAATGAGTTTGTATATGGAGAATTTGACTAATTTAGATCTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACCGAGAAATTGATAATGGAACTTCTTCCTGATAATCATCTAGTTCAAGTTTCCTCTCCAGACTCTACTGCTTGCGTTCATAGTTCCATCTCAAGGGATCTTTCTGTTTCCGAACTTTCATCAGTAAAGGAGTTGCCAGATCAATCATTAAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAGTTTTTGAGGCCTCGGATTTTCTGCCTGGAGCATGCTGTTCAAATATTTGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTACCAGAAAATAAAGGCACATGCCAGGGCAGTTGCGGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTTTGATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGGAATTGTGTCCATGCAAGAAATAACTCTCCATCTAAACAAGTTCCTTGGATACTAGGGACGCTGTTGTATGATAAATGCCTTGCTTCAAAATCTTTAGCTTTAAATTGGCAATCACGGAGATCTCGATCAAAAAGGTCAAGTTGTTTGGCTCAGACTAAACCGTGTGACAGTATTGAGAGAAAGAAGGAGGATCGGTTTTATGGAAGAATAGATGACTCCCCTGCTGAAAAGAAGCTACTTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGGTGTTTCCCTGTAGCAAGCATGGTCAGTGAATTCCAAGAGAAGTCCAAAAATTTGTCAGCTACTTTGAATGGGGATCATAATAATTGTTTTTCTAAAACTGATCTTGAAGCTAAGAATTTCAGGAGTGATTATGCATTGTCATGTGTCTCTGCTTCTACCAAAATGTCTCCAATACATCCTGAAATCCAGATTGCTGAAATGCCTGCTAGCACGAGATTAAACGATGCTAAACCGCAACCTTCCAATTCCATTCCTGATCATACTTTAATGACTGAAGAAGTTGGAGCAGAGATTGAGAAGCAAACCATACAGGAATCAGATGTAGACAGAAATAATGATTTAACACTCGGTCATTCTAAGATGCATTGCAATACCAGTGTCTCAGAAATATGTGGCAAGGAGAGCCAAGGTTGTCAGGACAAGAAATGTTCTAGCTCACTTACAAATGCAACTGATAGAAATATTGAAATGATTAGAATTTCTGAAATTACAGAAGCAATTATCATCGATAGCAGGTGTAATAGCTTAATTTTGAATGGTGAAGGGCATCAAGAATATCAGTCTACCTGCAAAAGCAACAATGAGGAAGCTGCTTTATCACCTGCTTCATTGGTAAATCAATCTACCCTGGCATCTGTGGTTGGAAGTTTTGGAAGTCCAAATAATAATTATACTGCAGAAAAAATTAGCAGTCCTATTTTCCTAGAAAAGACAACTGAGGAAGAAATTGATTCTTTAAGCGAAAGGGACAAGGAACCTCTAATTGATGACAGACCAATTAGCGAACATACTCTAAAAGAAGTTTGTGAAGTTCAAAGAGAGCTTTATGCTTCTGCAGACTTGCATAATACCATAGTCTTGGATTATGAGATGCAACATGAAACTCAGGGTGGAAAAGATAGCAGAAAAGAAATAAATCAGTCAACTCTTGTTTCAACAATTACAAGAGGGGAATATGCTGAAGGGTTGAATGATGAAGTGATTCCAAAGTCTGTGGAGCAGTGCCAGATTGAAAATATGAATAAAATTAATGTGGAACCTGTTTCTAGCTATGTTGCAAAAGATAAAGAAAAAGAAACGGAAATCCAGTCAGTGAGTATAATTGATGAGGAATTTTGCTCTGGCACAGATACATCGATAGATGACTCTTCATCAATCCAGGAATGTTCTAAAATTGAGAAAGAGAGCTGTGTTACAGAAAACATAAATGGAATCAAAGCCAATTTGTCAAAAGATAATAGGGAGCTGGAAAGCTGCGAGTTGACTACAGCAGTTCCCAGATCAAATGCCAGGAAGAATAAAAAGAGAAAAGTGAAAAATACAACGAAGAATCAATCCAATATTGACAACTTTATTAGAAGTCCGTGTGAGGGGTTGAGGCCAAGAGCTGGGAAGATTGCCACTGACAAAAGTGGGGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAAAGGGCAAGGAGATCTTCTGAAGGTTTGGTTCCTCACAAAAATAAAAAGGATGATGTTAAAAAGCCCCATAAGTGTGACCTTGATGGTTGCCAAATGAGTTTCAAGACTAAGGCTGAGTTACTACTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCATATTCGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTGCACAATATCCAATTCATTCGAAGGCAGTTAG 4491 0.405 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPFPKPSKKYVFSNLNRSLLKCPDFGPDNSSLGVCNSSKTSSGDGSSDGVLRAVFTTRHQELGQSQSVKKAKGTVQNPLSGVHKQVWQSGEAYTLEQFESKSKSFAKSVLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRQRKRTYYKSRLDSSDCKQTETGCVRDTQTDETKVASVQSHSDTCLQMAKSSTTVSTFSSNDDSQSSKEKSSDASNEMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYSGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQHPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKKAVLWNADLLPDSSKDFQLPDLTSTTGSSMAHMSNISSAEKSGHYLLDEMSLYMENLTNLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLIMELLPDNHLVQVSSPDSTACVHSSISRDLSVSELSSVKELPDQSLNKCNKCWNTSSKFLRPRIFCLEHAVQIFEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHSAFDYNEVPLDTASPENLTLIDLAIDGEEHDECEDWTSKLGINLRNCVHARNNSPSKQVPWILGTLLYDKCLASKSLALNWQSRRSRSKRSSCLAQTKPCDSIERKKEDRFYGRIDDSPAEKKLLQYSRRKFKSKQRCFPVASMVSEFQEKSKNLSATLNGDHNNCFSKTDLEAKNFRSDYALSCVSASTKMSPIHPEIQIAEMPASTRLNDAKPQPSNSIPDHTLMTEEVGAEIEKQTIQESDVDRNNDLTLGHSKMHCNTSVSEICGKESQGCQDKKCSSSLTNATDRNIEMIRISEITEAIIIDSRCNSLILNGEGHQEYQSTCKSNNEEAALSPASLVNQSTLASVVGSFGSPNNNYTAEKISSPIFLEKTTEEEIDSLSERDKEPLIDDRPISEHTLKEVCEVQRELYASADLHNTIVLDYEMQHETQGGKDSRKEINQSTLVSTITRGEYAEGLNDEVIPKSVEQCQIENMNKINVEPVSSYVAKDKEKETEIQSVSIIDEEFCSGTDTSIDDSSSIQECSKIEKESCVTENINGIKANLSKDNRELESCELTTAVPRSNARKNKKRKVKNTTKNQSNIDNFIRSPCEGLRPRAGKIATDKSGVEINQVDKENQVAKRARRSSEGLVPHKNKKDDVKKPHKCDLDGCQMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRCTISNSFEGS 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02011 1496 Pfam jmjN domain 17 50 IPR003349 -
Gma10g02011 1496 SUPERFAMILY Clavaminate synthase-like 293 459 - -
Gma10g02011 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 1416 1438 IPR013087 -
Gma10g02011 1496 MobiDBLite consensus disorder prediction 1365 1389 - -
Gma10g02011 1496 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1488 - -
Gma10g02011 1496 SMART cupin_9 293 462 IPR003347 -
Gma10g02011 1496 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Gma10g02011 1496 SMART JmjN_1 15 55 IPR003349 -
Gma10g02011 1496 ProSiteProfiles Zinc finger C2H2 type domain profile. 1414 1443 IPR013087 -
Gma10g02011 1496 SMART c2h2final6 1444 1468 IPR013087 -
Gma10g02011 1496 SMART c2h2final6 1414 1438 IPR013087 -
Gma10g02011 1496 SMART c2h2final6 1391 1413 IPR013087 -
Gma10g02011 1496 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1488 - -
Gma10g02011 1496 Gene3D Cupin 9 466 - -
Gma10g02011 1496 Gene3D Classic Zinc Finger 1412 1491 - -
Gma10g02011 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 1446 1468 IPR013087 -
Gma10g02011 1496 SUPERFAMILY beta-beta-alpha zinc fingers 1432 1472 IPR036236 -
Gma10g02011 1496 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Gma10g02011 1496 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Gma10g02011 1496 MobiDBLite consensus disorder prediction 263 293 - -
Gma10g02011 1496 ProSiteProfiles Zinc finger C2H2 type domain profile. 1444 1473 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02011 Gma-Chr10 47558572 47567730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02011 1 903 C2H2 Transcription Factor Family AT5G04240 55.184 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g02011 JmjC 1.8e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02011 - - gmx:100799861 2866.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02011 10 47558572 47567730 Gma20g01697 20 44171188 44180124 GST